Arvicola amphibius (Eurasian water vole): 119828057
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Entry
119828057 CDS
T08327
Symbol
Ddx18
Name
(RefSeq) ATP-dependent RNA helicase DDX18
KO
K13179
ATP-dependent RNA helicase DDX18/HAS1 [EC:
5.6.2.7
]
Organism
aamp
Arvicola amphibius (Eurasian water vole)
Brite
KEGG Orthology (KO) [BR:
aamp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamp03041
]
119828057 (Ddx18)
03009 Ribosome biogenesis [BR:
aamp03009
]
119828057 (Ddx18)
Enzymes [BR:
aamp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
119828057 (Ddx18)
Spliceosome [BR:
aamp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
119828057 (Ddx18)
Ribosome biogenesis [BR:
aamp03009
]
Eukaryotic type
90S particles
Helicases
119828057 (Ddx18)
Pre-60S particles
119828057 (Ddx18)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
CTE_SPB4
ResIII
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
119828057
NCBI-ProteinID:
XP_038206013
LinkDB
All DBs
Position
12:98492790..98506395
Genome browser
AA seq
662 aa
AA seq
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MSHLQMKLLRKKIEKRNIKLRQRNLKLQEASNTSLSQLSNEDVPKEEVKVRKVKKALKHA
ARVGSAEAQSEGVPEETAENSTKVEKLPQKPTALTNGETAAVPSPDSKSKKKKKKKRKMA
NDAEPDTKKAKTEESNVALEEAEDAAVEKPDDKEVPSLPLGLTGAFEDTSFASLSNLVNE
NTLKAIEEMGFKRMTEIQHKSIRPLLEGRDLLAAAKTGSGKTLAFLIPVIELIVKLKFMP
RNGTGVLILSPTRELAMQTFGVLKELMTHHVHTYGLIMGGSNRSAEAQKLTNGINIVVAT
PGRLLDHMQNTPGFMYKNLQCLVIDEADRILDVGFEEELKQIIKLLPVRRQTMLFSATQT
RKVEDLARISLKKEPLYVGVDDDKEVATVDGLEQGYVVCPSEKRFLLLFTFLKKNRKKKV
MVFFSSCMSVKYHYELLNYIDLPVLAIHGRQKQNKRTTTFFQFCNADSGILLCTDVAARG
LDIPEVDWIVQYDPPDDPKEYIHRVGRTARGLNGRGHALLILRPEELGFLRYLKQSKVPL
NQFDFSWSKVSDIQSQLEKLIEKNYFLHKSAQEAYKSYIRAYDSHSLKQIFDVNNLNLPQ
VALSFGFKVPPFVDLNVSSHDGKLKKRGGGGGFGYQKTKKVEKSKIFKHISKKTADRRQF
SH
NT seq
1989 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcacttacagatgaaactcctgcgcaagaagattgagaagcggaacatcaagctg
cggcagcgaaacctgaagctgcaagaagcatcaaacacaagcctatcacaactttccaat
gaagatgtgcccaaagaagaggtaaaggtcagaaaagttaagaaagccttaaagcacgct
gcgagggtgggctcagcagaagcacaaagtgaaggcgtgcctgaagagacagcggaaaac
tcgacgaaagttgaaaagttaccccagaaacctaccgctttaaccaatggagaaacagca
gcagtgccatctcctgattcaaaatcaaaaaagaaaaagaagaaaaagaggaaaatggca
aatgatgcagagcctgacaccaaaaaagcaaaaactgaagaaagcaatgtggctcttgag
gaagcagaagatgctgctgtggagaaaccagatgacaaggaagtgcccagcctgccccta
gggctgacaggggcctttgaggacacttcgtttgcttccttgtctaacctcgtcaatgaa
aacactctgaaggctatagaagaaatgggcttcaagcgcatgactgagatccaacataaa
agtatcaggccacttctggaaggcagggatcttctagcagctgctaaaaccggcagtggc
aaaactctggctttcctcatccctgtgatcgagctcattgtgaagttaaagtttatgccc
aggaatggaacaggagtcctgattctctctcctaccagagaactggccatgcagaccttt
ggtgttcttaaggaacttatgacgcaccacgttcacacgtacgggctgatcatgggtggc
agtaacaggtctgccgaagcgcagaagctcaccaatggcatcaacattgtcgtggccacc
cctggccggcttctagaccacatgcagaatactccagggttcatgtacaagaacctccag
tgtcttgttattgatgaggctgatcgtatcttggatgttggatttgaagaagaattaaag
caaattattaaacttttgccagtacgcaggcaaactatgctcttttctgccacacaaact
cgaaaagttgaagacttggcaagaatttctctgaaaaaagagccattgtatgtgggtgtt
gatgacgataaagaggttgccacagtggacggacttgagcagggatatgttgtgtgtccc
tctgagaagaggttccttctgctcttcacattccttaagaagaaccggaagaagaaagta
atggtcttcttttcatcgtgtatgtctgtgaagtaccactacgagctactgaactacatc
gacctgcctgtcttggccatccatggaaggcaaaagcaaaataagcgaacaaccacattc
ttccaattctgcaatgcagattcagggatactgctgtgcacagatgtggcagccagaggg
ctggacatccctgaagtcgactggattgttcagtatgaccctcccgatgaccccaaggaa
tacattcatcgtgtgggtagaacggctcggggcctgaatggaagagggcatgccctgctc
atcctgcgccctgaagagttgggtttccttcgttacttgaagcaatccaaggttccactg
aatcagttcgacttttcctggtctaaagtttctgatattcagtctcagctggaaaagctg
atcgaaaagaactattttctccataagtcggcgcaggaagcatacaagtcctacatacga
gcctacgactcccactctctcaagcagatcttcgatgtgaacaacttaaacttgcctcag
gtggctctgtcctttggctttaaggttcctcccttcgttgatctgaacgtgagcagccat
gatggcaagcttaaaaagagaggaggtggcggtggatttggctaccaaaaaacaaagaaa
gtggagaagtccaagatctttaaacacatcagcaagaagacagcggaccgcaggcagttt
tctcactga
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