Asterias amurensis (Northern Pacific seastar): 139934365
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Entry
139934365 CDS
T10870
Name
(RefSeq) CCR4-NOT transcription complex subunit 1-like isoform X1
KO
K12604
CCR4-NOT transcription complex subunit 1
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139934365
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139934365
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
139934365
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
139934365
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not1
NOT1_connector
CNOT1_CAF1_bind
ARM_Cnot1
CNOT1_TTP_bind
DUF3819
CNOT1_HEAT
CNOT1_1st
Nup49_C
DUF2891
Motif
Other DBs
NCBI-GeneID:
139934365
NCBI-ProteinID:
XP_071784658
LinkDB
All DBs
Position
3:complement(23327958..23383329)
Genome browser
AA seq
2636 aa
AA seq
DB search
MNLDSHSLALSQVTNLVGNLSKKSYKQSVAEISRLVSQQGPEGDRHLLRCLFSYVDFSGD
GKTAAKEFHQLHIQLLIQECTTLFTKPNFVCTLCHALDNPLHQQKSLKPSTQLFSQISKV
LKLSRVQEVVLGLALTHSSKADTRSHALQFVKHKLPDLLRSYIDSDIRSPQEGGLADVSA
EVLHLLLTHLLHSSKDQLGIVAPQREAFLKTIKKDFPPDQVPVVLVPLLYSDTQDIGMDR
IVNDNTNLPKAVMDGSLADMMQEMGYSCCATMDECRKSLLQFGTNSLSASAVARVISMMG
RTHSTLTDSMPLQSITGSSVWSDGKDKADPNSQPSTWNVDVFVEVIKDLAPHLNFREVIH
ELDNPGFLLNDVQGLRIVKNAFLRGLPDVFPVDVLYRVWKNTDGQLSWIQLALANPEVFC
FADYPCHTVVIDILKAPPEEDNREVATWKSLDLVETLLKLAEAGKYDQVKSLFGFPIKHC
PDMLLLALLQVQRKLEEEYMQHVLATAALLKSSIQDKWRRKKMCQQVAPPIWTPLRHELI
STLMPIFLGNHPNSAIVLHYAWHGQGQSPTIRQIVMHSMAEWYMRGENDQTRLSRILDVA
QDLKALSLLLNATPFAFVIDLACLASRREYLKLDKWMTDKIREHGEPFVQTCVTFLKRRA
PQVIGGLEPQPKELPGGGKTGVLPPETIGTMLACLQACASSVAPELAETIMTMVANCSSL
LKSRPPPGVIKSQVGISSLSPGIGPQMEGISGMSGLGNTTPSTPGIHNFPNNPLSSAFGN
IQSSAAAASQKPFPPLGATTMSGSSLGGGSLVGGGSLGTGSLGTSGLGGGGLGSGLGSSA
FGGGLGGGSGSSLAGGFGSSSSSGFGTGNGSGLGGGFGGSSAAAFGSGSGSSLGGGFGSS
LGGGLGGGLGGGLGTGGLGGGLGGGLGGGFGSSLGGGLGGGLGGGLGGGLGGGLGGGLGA
GGGLGGGLGGGGGLGGGLGGGLASLTGGANLQSNPHELRGSSALPPVGGDPFNRQPVGST
PGSGFGNQTQPAINQPAKSNTGAIKPSDISNIWPELSQTFPPEIDEEANGYFQQIYNQPP
NPVMSVDEVLQMLKQFKDSQVKKEREVFMCMLRNLFEEYKFFPQYPERELLITACLFGGI
IEQGLVTYMALGIALRYVLEALRKPFGSKMYYFGIAALDKFKTRLKDYPQYCQHLSAIQH
FNEFPQLLTEYVQFGVMSREPPQRVPTPSSTVITAASSTTATEVTTPVSAVNAPATSATT
TSTATITKPLTKGGTQAPSIANTTNIDTLLVATPKDEVINEPPEAIQDKVAFIFNNLSQS
NQPQKCEELRELMSDEYLDWLSQYMVMKRASIEMNFHPLYSNFVDQIKKGQLNDLLVKET
LRNIEVLLSSDKSDANFSDRTLLKNLGHWLGMLTLAKNKPILQIDLDMKSLILEAYHLGQ
QELLYVVPFVAKVMESCSKSRVFKPPNPWTMAIMGVLVELHQEPNLKLNLKFEVEVLCKN
MGLEPKDVKTYNYLTDSSQLRHLHEKLTGTKKAGEEQPLTQPPMQQQQQQQQQQPSVQPN
TSTPIPSSTAGSMASLVTDTMPTPTLSTVTTPAVAPTAGGAPAAQQSAAPVPQFSFHDLN
TSSLAGLAPHIAINAQIPLFQQHPQLRSCVRPMLERAVQELVHPVVDRSIKIALTTCEQI
VRKDFALDPEENRMRIAAHHMVRNLTAGMAMITCREPLLTSISNMFKSACITALKGGTPQ
TKELIDQAANVVATENVELACCFIQKCAVEKAIPEMDRRLATEIELRKHARNENRRYCDP
VVLTYQAERMPEQIRLKVGGVPAGQIAVYEEFARSIPGFQPTLEANQPPGFLVKPMQQSY
ATDEITQIYDKCVSEIEQHLHALIQSSTQNQHMQVLHTLLEAVVLARNSREIVTALALLQ
KAVEGILEGYTPQTMDPELALRYRDCHILVLKSLQDQRAYGPQWTNKQVTRVVCETRGDH
KYNLDAVEQLFRAHLINMQTFDMQLAQSMENGLNYTAVAFAMNLVRRYLIEEKQSNILNE
ADLYNTLHILARIASQTPNPPDGLQHLIEVVRQNHDPAFLDKAPGGPTSMMHSGISQARE
FDDPPGLREKTEYLLREWVSMYHSPASGKDSTKAFSAFVNQMHQQGILKTDDLITRFFRI
CTELCVDLCYRALSEQAHTPTLTRAKCFHTLDAFVRLIALLVKHSGDASNAVTKINLLNK
VLGIVAGVLLQDHEVRHTEFQQLPYHRIFNMLLLELNAPEQILEAINYQIMTAFCNALHV
LRPSKAPGFVYSWLELISHRIFIARMLAMLPQQKQGWPMYAQLLIDLFKFLAPFLRNAEL
PKYTALLYKGCLRVLLVLLHDFPEFLCDYHYGFCDVIPPNCIQMRNLILSAFPRNMRLPD
PFTPNLKVDMLTDITQPPRIMTNFSAMIQPATFKKDLDSYLKTRSPVTFLSELRSHLQVS
QEPGQRYNTALMNALVLYVGSQAIAYIHSKGSTPSMSTITHSSHMDIFQNLVVDLDTEGR
YLFLNAIANQLRYPNSHTHYFSCTLLYLFAEANTEAMQEQITRVLLERLIVNRPHPWGLL
ITFIDLIRNPSFKFWNHEFVHCAPEIEKLFESVARSCMQQKGQAPAMNREAGEALD
NT seq
7911 nt
NT seq
+upstream
nt +downstream
nt
atgaatctggactcccactcgttggccttgtctcaagtcacgaaccttgtgggcaattta
tcgaagaaaagctacaagcagagtgtggcagaaatatcccgtcttgtcagccagcagggg
ccggagggggacaggcatctattgcgttgtctcttctcttatgttgacttcagcggtgat
ggtaaaactgccgccaaagaattccatcagctgcatattcagttactgatacaagaatgt
actacactctttaccaagcctaatttcgtttgtactttgtgccacgcccttgataaccct
cttcaccaacagaagagtctaaagccatccactcagctcttctcccagatcagcaaagtc
ttgaagctgagtcgagtgcaggaggtagtcctaggtctagctctcacgcactcctccaaa
gcagacaccagatctcatgcgttgcagtttgttaaacacaagctaccagacttattgcgg
tcatatatagatagtgacatcagaagcccccaagagggcgggcttgcagacgtatctgca
gaggtccttcaccttctccttacgcacctgttacacagctctaaggatcagttaggtatc
gtagcaccccagcgagaagcattcctcaaaacaatcaagaaagactttcctccagaccag
gtgcctgtggttctagtgcctctgctgtacagcgacacacaggacatcgggatggatagg
attgtcaacgataataccaacctacccaaggcagtgatggacggctccttggcggacatg
atgcaggagatgggctacagctgctgcgccaccatggacgagtgtcgtaaatctctcctc
cagttcggcaccaacagcctatctgcatcggcagtggccagagtcatcagcatgatgggc
agaacacactccaccctcacagatagcatgcccttacagtctatcaccggcagcagcgtc
tggagtgacggcaaggacaaagcagaccccaactctcagccgagcacctggaatgtagac
gtctttgtcgaggtcatcaaggacctggctccccatctcaacttcagggaggtgatccac
gagctggacaacccgggtttcctgctgaacgacgtacagggactgcgcatcgtcaagaat
gccttcctccggggcctgcccgacgtcttccccgtggacgtgctgtacagggtctggaag
aacacagacgggcagttatcatggatccagctggctctagccaaccctgaggtcttctgc
ttcgctgactatccttgtcatactgtcgtcatagacatcctaaaggcgcctccggaggaa
gataacagagaggtggccacatggaagtcactggatcttgttgagacccttctgaagctg
gctgaggctggcaagtacgaccaagtcaagagtctgtttgggttccccatcaaacattgt
ccagatatgctgcttctagctctacttcaagttcagagaaaacttgaagaggagtacatg
cagcatgttttagcaactgctgcactcctgaaaagtagcattcaagataaatggcggcgc
aagaagatgtgccagcaggtagctccgcccatctggactcctctacgtcatgagctcatc
tcaacattgatgccaatcttcctggggaatcatcctaactctgccatcgtgttgcactac
gcatggcatggacagggtcagtcgccaaccatccgccagatcgtgatgcactccatggca
gagtggtacatgcgcggagagaatgatcagacgcgactgtctcgcatcctggacgtagct
caggacctgaaggccctctcactgctcctcaacgccacaccgtttgcctttgtcatcgac
ctggcttgccttgcatcaaggcgagagtatctcaaactggataagtggatgaccgataag
attagggaacatggggagccgtttgttcagacgtgtgttacattcctgaagcgtcgtgcc
cctcaggtgatcggtggccttgagcctcaaccaaaggaactacctgggggagggaagacg
ggtgtgttgccccctgagaccatcgggaccatgctggcgtgtcttcaggcatgtgcaagt
tcagtagcgcctgagttagcagagaccatcatgacgatggtggctaattgttccagtcta
ctcaagtccagacccccaccaggtgtcatcaaatcccaggtggggatatcgtcattgtca
cctggcatcggaccacagatggagggaataagtggaatgtccggtctgggcaacacaact
ccatccactcctgggattcacaacttcccaaacaacccactcagctctgcttttgggaac
atccagtcatctgctgcggcagcaagccagaaacccttccctcctctaggagctaccacg
atgagtggcagctccctgggtggtggttccttagtcggcggtggatccttaggaactggg
agtttaggaacgagcggattagggggaggaggactcggatcaggcctcggatcgtcggca
ttcggcggcggcctcggcggaggctcaggaagcagcctcgcaggtggattcggaagcagc
tccagcagcgggttcggtaccggcaacggaagcggactcggaggtgggttcggaggaagc
tcagcagctgcatttggatcgggatcaggctccagtctaggaggagggttcggcagcagc
ttaggaggtggtctaggcggcggactcggaggcggattgggtactgggggattaggagga
gggctcggtggagggctaggaggtggatttgggagcagtcttggaggaggtctaggaggt
ggacttggaggtggactaggaggtggtttgggaggtggcctcgggggtggactaggagct
ggaggtggcctcggtggaggtttaggcggtggaggtggcctcggtggaggtttaggaggc
ggtctcgccagcttgactggaggcgctaaccttcagtctaacccacatgagctccgaggg
agtagtgccttgcctccggtgggtggcgaccctttcaacaggcaaccagttggcagtact
cctggtagcgggttcgggaaccagacccagcctgcaatcaaccagccagcgaagagcaac
actggagccatcaaaccaagtgatatttctaacatctggccagagttgagtcaaacattt
ccgccagagattgatgaggaagccaacggctacttccaacagatctacaaccagccgccg
aaccctgtcatgtcggtggacgaggtccttcagatgctcaaacaattcaaagactcgcag
gtcaaaaaggaaagggaggtgtttatgtgtatgctgaggaatctatttgaggagtacaag
ttcttccctcagtatccagagagggaacttctcatcacagcctgtctgtttggcggcatc
atagagcaaggacttgtcacgtacatggcacttgggatcgccctccgctacgttctggag
gcgctgcggaagccttttggcagtaagatgtactactttggaatcgcagccttggataag
ttcaagacacgtctgaaggactatccccagtactgccagcacctgtcggccattcaacac
tttaacgagttcccacagcttctgacagagtatgtccagtttggggtaatgtcaagggag
ccaccacagcgtgtccccacaccatccagtactgtcattactgcagcttcgtcgacgaca
gcaacagaggtgactacacctgtgtccgctgtcaatgcacccgctacgtcagccacgaca
acgtccactgcgacaattactaaacccttaaccaagggtggtacacaagctccgtctatt
gcaaacacaactaacatcgacaccctgctggtggccacacccaaagatgaagtcatcaac
gagccaccggaggcgattcaagacaaggtggcgttcattttcaacaatctctcacagtcc
aatcagcctcagaagtgtgaggagctgagggaactgatgtctgatgaatacctagactgg
ctgtctcagtacatggtgatgaagagggccagcatcgagatgaacttccatccgctctac
tccaactttgtggaccagatcaagaagggacaactgaacgatctcctggtcaaggagacg
ctgagaaatattgaggttttactgagctcggacaaaagtgacgccaacttctcggatcgg
actcttctcaagaatctgggtcactggttgggaatgctgacattggcaaagaacaaacct
atcctacaaattgatctcgacatgaagtccctgatccttgaggcgtaccaccttggccag
caggagcttctctacgttgtccccttcgttgccaaggtgatggaatcttgcagcaagagc
cgcgtcttcaagccgcccaacccgtggacgatggccatcatgggagtactggtcgagctc
caccaggagcccaatctcaaactcaatctcaagtttgaggtggaagtgctgtgcaagaac
atggggctggaacccaaagatgtaaagacctacaactacctaacggattcctcacagctc
cgccatctccacgagaaacttaccggcaccaagaaggccggggaggagcagccgttaacc
cagccaccaatgcaacaacaacaacaacaacaacaacagcagcccagcgtccagccaaac
accagcactccgatacccagcagcaccgcgggttctatggcatctctggtgacggatacc
atgcccacgccgacgctgtctaccgtgacgacacctgcagttgccccgacggcaggtggc
gccccggcggcgcagcagtccgctgcgcccgtaccacagttcagcttccacgatctgaac
acgtcttcacttgctggtctggctcctcatattgccatcaatgcacaaattccactattc
cagcagcatccacagcttcgtagctgtgtacgacccatgctggagagagcagtccaggaa
ctagtccatcccgttgtggatagatcaatcaagattgctctgactacgtgtgaacagatc
gtcagaaaggattttgcgttggaccccgaggagaatcgcatgcgcatcgctgcgcatcac
atggtgcgtaacctgacagcgggtatggctatgatcacatgccgtgagcctctactgaca
agcatcagcaatatgttcaagtcggcatgtatcactgcactcaagggaggcaccccacag
actaaggagttgattgaccaagcagccaacgtggtagctacagagaatgtggagcttgct
tgctgtttcatccagaaatgtgccgtggagaaagccatcccagagatggacaggcgtctt
gcaacggaaattgaactgcgcaagcacgctcgcaatgagaaccgacgctattgtgacccg
gttgtcctgacataccaggcagagagaatgccggaacagatcagactgaaggttggcggt
gttcctgctggccagatagctgtatatgaagagtttgcccgcagtatccccggcttccag
ccgacactagaggctaaccagcccccaggattcctggtcaaacccatgcagcaatcgtac
gccacggacgaaatcacccagatttacgacaagtgtgtctctgagatcgaacagcacctc
cacgctctgatccagtcctctacccagaatcaacacatgcaggtcttacacacactgctg
gaggcggtggtgctagccagaaactccagggagatagtcacggctctcgcactcctgcaa
aaggccgttgagggcatccttgaaggctacacgccacagaccatggatcctgagctagct
ctacgctacagagactgtcacatcttggttctgaaatcactacaagaccaacgggcttac
ggccctcagtggaccaacaaacaggttaccagagttgtgtgcgagacacgcggtgaccac
aagtacaacttggacgctgtggagcagctgttcagggctcacctcattaatatgcagaca
tttgatatgcaacttgcacagtcgatggagaatgggctgaactacaccgcagtagccttt
gccatgaacctcgtccgtcgctacctgatcgaggagaaacagagtaacatcctgaacgag
gcggacctctacaacacgctgcacatcctagcacgcatcgccagtcagacacccaaccca
ccagatggtctacaacacttgatcgaggtcgtccgtcagaaccatgaccccgccttcctg
gacaaggcccccggtggccccacctccatgatgcattcaggcatctcacaggccagggag
tttgacgacccaccaggcctgcgagagaagaccgagtacctgctgagggagtgggtcagc
atgtatcactcacccgccagcggcaaggacagcaccaaggctttctctgcatttgtaaac
cagatgcaccagcagggaatcctcaagacagatgacctcatcacccgattcttccgcatc
tgtacggagctgtgcgtggacctctgctacagggctctctctgagcaggcccacaccccg
acgctgaccagggcaaagtgtttccacaccctggacgccttcgtgcggctgattgctctc
ctcgtcaaacactctggagacgctagtaatgcagtcaccaagatcaatctgctgaacaag
gtccttggcattgtagctggggtactccttcaggaccatgaggtacgccatacagagttc
cagcagttgccgtaccatcgcatcttcaatatgctcctcctggagctcaatgccccggag
cagatactggaagccatcaactaccagatcatgacggccttctgcaatgccttacatgtg
ttgaggccttccaaagccccagggttcgtatactcctggctagagctgatctctcatcgg
atctttatcgcaaggatgctggccatgttaccacaacagaagcaaggatggccaatgtat
gcccagctcctgattgatctctttaagtttctggctcctttcctacgtaacgctgagctg
ccaaagtacacagcattgctgtacaaggggtgtttacgtgtcctgttggtgctcctgcac
gacttcccggagttcttgtgtgactaccactacggattctgcgacgtcatcccgcccaac
tgcatccagatgcgcaatctgatcctgagcgccttcccgcgcaacatgcgtctgccggac
ccgttcaccccgaacctgaaagtggacatgctgacggatatcacccagccgccgcgcatc
atgacgaacttctcggccatgattcaaccagccaccttcaagaaggatcttgactcgtac
ctaaagactcgtagtccggttacgttcctctcggagctacgcagccacttacaggtctcc
caagagcccggccagcgctacaacactgccctgatgaacgcgctggtgctgtacgtcggc
tctcaggccattgcgtacatccacagcaagggaagcacgccctcgatgagcaccataacg
cattcctcacacatggacatcttccagaatctcgtggtggatctggatacggaaggtcgg
tatcttttcctgaatgctattgccaaccagctacggtaccctaacagtcacacacactac
ttcagctgcacgctactgtatctcttcgctgaggcaaacacagaggcaatgcaggaacaa
atcacaagggttctgcttgagagattgatcgtgaacagaccgcacccctggggccttctc
atcaccttcattgacctcatcagaaatccaagcttcaagttttggaatcatgagtttgtc
cactgtgctccagagattgagaaattgtttgaatctgttgccagaagctgcatgcaacag
aaggggcaagcaccggcgatgaaccgcgaggccggggaggcactggactga
DBGET
integrated database retrieval system
