Asterias amurensis (Northern Pacific seastar): 139935672
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Entry
139935672 CDS
T10870
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03440
Homologous recombination
aamu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
139935672
03450 Non-homologous end-joining
139935672
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamu03032
]
139935672
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139935672
DNA replication proteins [BR:
aamu03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
139935672
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
139935672
BRCA1-C complex
139935672
NHEJ (non-homologous end-joining)
MRX complex
139935672
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
AAA_15
AAA_21
Rad50_zn_hook
SMC_N
SbcC_Walker_B
AAA_29
AAA_13
ABC_tran
AAA_16
UPF0231
Motif
Other DBs
NCBI-GeneID:
139935672
NCBI-ProteinID:
XP_071786283
LinkDB
All DBs
Position
4:26989854..27033414
Genome browser
AA seq
1312 aa
AA seq
DB search
MSSIEKLSIRGIRSFGHEDRERQVIEFFHPLTLITGQNGAGKTTVIECLKYVCTGDMPPG
AKGAAFIHDPKVAHETEIKAQVKLKFNDVTGKSVIITRNSVVTQKLKKAEFKSMEGVILR
TNELGERVSLSSKCAELDREMVASLGVSKPVLTNVIFCHQEEACWPLSDGKSLKGKFDEI
FAATRYIKALEVIRKLRSEQNTSIREFKTDVKYLKERKDKVKELSSELESKKKTLSAAKE
SVNHITKELHPLGTRIHEIEDREEEINLLSTEVAKRKAEKTQMDKNKQEIEDNLEFIFQG
TNDELRTIFREHQAKIEEKERQYAQTEKKLSRLGTSLQQVNDKKSQLLLKQGELGTEHKQ
HLETIKNRDRRIQKVASDMQFAGFTGTVFSDEKVEEFIELMDEELKEIDAEGKELLAQYR
SKEEGLETQLQEFRDTKTKLQHTVQMKSDMTTKNKDELKRINHQLSRVEASAHRLQELEE
ELKRAESELKEAESAMDLDKLRREVQKLQTEKQTHDAEMSQLSNEMSAISLQSKARAQLE
ILQKDKNAKEDQIRKIRGRHEEDVNRLLGHFPTDDIRNKLADYLMSRDAEVKNHLSAVQR
IRGQLSTKEANRKMIMDELKKKEEELRGYEARLLQECGSQDVGATLEQYQQAITNLQSEK
GALTGSSHLFERYIRSLQRAEAQCPLCHRGFDGQTEVDELVQELQDKLRMAPSKMTEKDQ
AIKQNRSKYDKLIELKPVKDFVTKLSETEIPGLRSKLTVINADIEKLKSSLNDEEDSLML
VQVDLSMANEMKPDIWQMDRCLAELKELEKRLAVQSQQLSGADAGRTIQQVNAERQDLEI
KLDTVNRTLDHKQRQINQQSKTLQVLGTRINDTTGEKLRLSGELQQQEKLHSQKAELTSA
NQSYNREITDANKQLKPIESKLSKLMNDKEKLQREKEQKVEEHKSQYDLINQKKHDVKIY
TKNIKSYEASGKEEKLIKVRSDITSIEDNMAELTRNQKDLTTTINQLNEDIANQQVRERE
LSDNTQLRKKVAEISKVEEELNKLKEQLGGIDQENMKGEKRQLQTRYTNLTKEKNQADGR
QAVLKEEVKKAERELSSDMYSNADDKYNDMMIKLRTTEIANSDLDKYSKALDRAVMNYHH
MKMSEINKIIRDLWRVTYKGQDIDYVEIRSDEETGGTQQRKNYNYRVVMVKGDTALDMRG
RCSAGQKVLASLLIRLALAETFCLSCGILALDEPTTNLDKDNIESLAQALVEIIKSREQQ
RNFQLIVITHDEDFVELLGHSDYTDYFYRITKNHEFKSTVSRREIGTLQAVA
NT seq
3939 nt
NT seq
+upstream
nt +downstream
nt
atgtcttcaatagagaaactcagcatccggggtatacggagctttggtcatgaggaccga
gaacgtcaagttattgaattctttcatccactcactcttataacggggcagaatggtgct
ggtaaaacgactgtcattgaatgtcttaagtacgtctgtactggtgatatgccgcctgga
gctaaaggggctgccttcatccatgacccaaaggtagctcatgagacagagatcaaagct
caggtcaagctgaagttcaacgacgtcacgggcaaatcagttatcatcacaagaaatagc
gttgtcactcagaagttgaagaaggccgagtttaaatctatggaaggagtaatcctcaga
actaacgaacttggtgagagagtcagcctgagctccaaatgtgccgagttggatcgtgag
atggtggcgtcgttaggggtctctaaaccagtcttgactaatgtcatcttttgtcatcaa
gaagaagcgtgttggccgctgagtgatggaaagtcactgaaaggcaagtttgatgagatc
tttgcagcaacaagatacatcaaagcattggaggtcatcaggaagctaagatcagagcag
aataccagcattcgtgagtttaagaccgatgtgaaatacttgaaggaacggaaagacaag
gtcaaagagctgagttcggagctagagtcgaagaaaaagacgctgagtgctgctaaggag
tctgtcaaccacatcacgaaagagttacacccattagggacacggattcatgagattgag
gatcgagaggaggaaataaatctcctgagcacagaagttgccaaacgcaaagcagagaaa
actcagatggacaaaaacaaacaagaaattgaagacaacttggagtttatcttccaaggt
acaaatgatgagcttcggacaattttcagggagcaccaggccaagattgaagagaaagaa
agacaatatgcccagacggagaagaagctcagcaggcttggaactagtcttcaacaggtt
aacgataagaaatcacaacttctgctgaaacaaggagagctgggaacagagcataagcaa
catcttgaaacgatcaagaaccgcgatagaaggattcaaaaggttgcctctgacatgcag
tttgctggattcaccggtactgtcttctccgatgagaaagtggaggaattcattgagttg
atggatgaggagctgaaggaaattgatgcagagggcaaggagttactggctcagtacaga
agtaaagaagagggtttagaaactcaacttcaggagttccgggacaccaagacgaagctg
caacataccgtacagatgaagagcgatatgacaacaaagaacaaggatgagttaaagcgc
atcaatcatcagttgagtcgagttgaagccagcgctcatcgattgcaagagctggaggaa
gaactcaagagagctgagagtgagttgaaggaagctgagagtgctatggacttggacaaa
ctcagacgggaagtccagaaacttcagacggagaaacaaacacatgatgctgaaatgagt
cagttaagcaatgagatgtcagcgatatcattacaatccaaggcacgagctcagctagag
atacttcagaaagataagaacgccaaggaagatcaaatcagaaagattcggggtcgtcat
gaggaagatgtgaatcgtctcttgggtcacttccctacagatgacatcagaaacaaactt
gccgattatctcatgtcaagggatgctgaggtcaagaaccatttgtcggcagtgcagaga
atccgtggtcagttatcaaccaaggaggctaacaggaaaatgattatggatgaattgaag
aagaaagaggaggaattaagaggatatgaagctcggctcttacaggaatgtggaagtcaa
gatgttggagcgacacttgagcagtatcagcaagctatcaccaacctacagagtgagaag
ggtgctttgactgggagttcacatctctttgagcgttatattcgctccttgcagagagcg
gaggcacagtgccctctatgtcacagaggatttgatggacaaactgaagtggacgaactc
gtacaagagcttcaagacaagttgaggatggctccgagcaagatgacggagaaagatcaa
gcaatcaaacagaacagatctaagtatgataagctgatcgagctgaaacccgtcaaggac
tttgtgacaaaattatcagagactgaaattcccgggcttcgatccaagctaactgtcatc
aacgctgatattgagaagttgaaatcttcacttaatgatgaggaagattctttgatgctc
gttcaagttgatctgagcatggctaacgagatgaaaccagatatatggcagatggataga
tgcttagcagaacttaaagagcttgagaagagactagctgtgcagtcacaacagctatca
ggagcagatgctggaaggactattcaacaagttaatgctgagagacaggaccttgagatc
aaactcgacactgtcaaccgcaccctggatcataaacagcgacagatcaaccagcagagt
aagacgcttcaggtactgggtaccaggattaacgacactaccggtgagaagttacgtttg
agcggagagcttcaacaacaggagaagcttcatagtcagaaagccgagttgacttcagcc
aatcagagctataatagagagatcacggatgcaaataagcaactgaaaccgattgagagc
aaactgagtaagctgatgaacgataaagaaaaactacagagggagaaggaacagaaggtg
gaagagcataaatcccagtatgacctcatcaaccagaagaaacatgatgtcaaaatatat
acaaagaatatcaaaagctatgaggcttctggaaaggaagagaagttgataaaagtacgc
agcgatattacgtccattgaagacaacatggctgagctgactcgcaaccagaaagatctg
accacaacaatcaatcaattaaatgaagacattgctaaccaacaggtcagggagcgagag
ttatcggacaacacccagctgcggaagaaagttgcggagatctcgaaggttgaagaggag
ctgaacaaactaaaggagcagctcggaggaattgatcaggagaatatgaaaggagaaaag
aggcaattacagaccaggtacaccaacttgaccaaagagaaaaaccaagctgatggtcgg
caggctgtcttgaaggaagaggtcaagaaagctgaaagggagttatcttcggacatgtat
agcaacgctgatgacaagtacaatgacatgatgatcaaactacggacaacggagattgca
aacagcgatttggataaatattccaaggctttggatagagccgtcatgaactatcaccac
atgaagatgtctgagattaacaagataatccgggatttgtggcgagtgacatataaagga
caagatattgattacgtggagattcgttccgatgaagagaccggagggacgcagcaacgt
aaaaactacaactatagggttgtcatggtgaagggagacacggcattggatatgagaggt
cgttgcagtgcaggtcaaaaggtcctagcatctttgctcatccgccttgcgttagcggag
accttctgtctaagctgtggaattctggctttagacgaaccaacgaccaatctcgacaag
gataatattgagagcttggcacaggcattggtggaaatcatcaagagtcgagagcaacag
cgtaacttccagctgatcgtgatcacccacgatgaagacttcgttgagcttctaggacac
tcggactacacggattacttctatcgtatcaccaagaatcatgaattcaaatcaacagtt
tccaggcgtgaaattggaacacttcaagctgtggcgtga
DBGET
integrated database retrieval system
