Asterias amurensis (Northern Pacific seastar): 139940301
Help
Entry
139940301 CDS
T10870
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase-like
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139940301
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139940301
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139940301
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139940301
Complex C
U5 SnRNP specific factors
139940301
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
PhoH
SWI2_SNF2
TcA_RBD
DUF603
Motif
Other DBs
NCBI-GeneID:
139940301
NCBI-ProteinID:
XP_071792597
LinkDB
All DBs
Position
8:complement(20161841..20210298)
Genome browser
AA seq
2150 aa
AA seq
DB search
MADATARSLQYEYKANSNLVLQVDRSLIERRGRDEATGEVMSLVGKLVGSKMGDRAQRTK
PPMQEERKIKRQKRDDARYDMNKFKGQTLLSQGIEDMVGIYYRPKTQETRNTYEALLSFI
QAAIGDQPRDILCGAADEVLATLKNEHSKNKDKKKELEMLLGSLAEERFALLVNLGKKIT
DYGSEKEKKAIEEEGIDETFGVNVQFEASEDDDDPDDCGEVKNEESEDDDDEGGMDTGYG
GTLSTSLGGSEAAMGMSKKDLHPRDIDAFWLQRQLSKFYDDPNVSQARSSEVLDILKKAA
DDGQVENQLVMLLGTNQFDFIKVLRQHRKMILYCTLLSRAQDATEKQRIEDKMKFDPTLA
PILQALTETDKEDIIKEERARRAAARQSKVDADLDAMETDEPENVLQPTEMLDIDDLVFA
QGGHLMANKRCQLPDGSFRKQRKGYEEVHVPALKPKPFDDAESLVPIERLPKYAQPAFEG
FKSLNRIQSRLYKSALESDENLLLCAPTGAGKTNVALLTILREIGKNINLDGTINTDVFK
IIYIAPMRSLVQEMVGNFKKRLDSYGITVSELTGDHQLSKDQIHGTQIIVCTPEKWDIIT
RKGGEKTYTQLVRLIIIDEIHLLHDDRGPVLEAVIARTIRNIETSQEDVRLVGLSATLPN
YQDVATFLRVKPEKGLFFFDNSFRPVPLEQQYIGITEKKAIKRFQLMNEIVYEKVMEHAG
KNQVLVFVHSRKETGKTARAIRDMCLEHDTLGQFLREGSASTEVLRTEAEQAENLELKDL
LPYGFAIHHAGMNRVDRALVEDLFADRHIQVLCSTATLAWGVNLPAHTVIIKGTQIYNPE
KGRWIELGPLDVLQMLGRAGRPQYDTKGEGILITGHSELQYYLSLQNQQLPVESQFVSKL
GDNLNAEVVLGNIQTMKDAVTWLGYTYLYIRMMRNPTLYGIPVDGKDSDPYLESHRINLI
HTAACQLDKNNLAKYERKSGHFQVTELGRIASHYYCTNDSISTYNSLLKPTLSEIDLFRV
FSLSSEFRNMVVREEEKLELTKLLERVPIPIKESIEEPSAKVNVLLQAYISQLKLDGFAL
VSDMVYITQSAGRLIRAIFEIVLHRGWAQLTDKTMSLAKMIDKRMWQSMNPLRQFRKIPE
EVVRKIEKKNFPWERFYDLGPNEIGELIRMPKMGKTLHKYVHQFPKLELATHIQPITRST
LRVELTITPDFQWEEKVHGNSEAFWILVEDVDSEIILHHEYFLLKGKFAQDEHVVKFFVP
VFEPLPPQYFIRVVSDRWIASETQLPVSFRHLILPEKNPPPTELLDLQALPVSALRNTAF
ETLYNSKFSVFNPIQTQVFNAVYNGDENVFVGAPTGSGKTIIAEFAILRMLSQSAEGRCV
FVTPLEALAEQVYAEWHAKFQMQLGKRVVLLTGETSTDLKLLAKGNIVISTPEKWDVLSR
RWKQRKNVQNVHLFIVDELHLIGGDNGPVLEVICSRMRYISSQIERNIRLLAFSSSLANA
KDVAQWLGASTTNTFNFHPNVRPVPLEMHIQGFNITHTASRLIAMVKPTYNAILKYSPNK
PVIVFVPSRKQTKLTAIDLLTYASAEDTEDSRFLHVAKEDLAGHLSKVNDETLCEMLENG
IAYLHEGLSDMEKKVVEQLYTSGAIQIVVAARNMCWGMTFPAHLVVVMDTQYYNGKIHAY
VDYPVTDVLQMVGRANRPDIEHEVGKCVILCQGSKKDFYKKFLYEPLPVESHLDHCLHDH
FNAEVVTKTIENKQDAVDYLTWTFLYRRKTQNPNYYNLQGVTHRHLSDHLSELVENTLQD
LQQSKCVSIEDEMDISPLNLGMIAAYYYINYTTIELFSMSLNNKTKIKGLIEIISSAAEY
EQIPIRHHEDSVMKQLASRVPNKLANARFNDPHVKTNLLVQAHLGRMQLSAELQSDTEEI
LSKALRLIQACVDVLSSNGWLSPALAAMELAQMVTQSMWNKDSYLKQLPHFTSDLIKNCT
DKGVESIFDIMEMEDEDRNALLQLADAQMADVARFCNRYPNIELTYEVQDKDSLESGSPV
VVNVILEREDEVTGPVVAPFFPQKREEGWWVVIGDTKTNSLISIKRLTLQHKAKVKLDFV
APSPGVHNYTIYYMSDAYMGCDQEYKFSIEIREARDSSSEDSDEDSSDEE
NT seq
6453 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccacagcacgctcgttgcaatacgagtacaaagcgaattccaatcttgta
cttcaagttgatcgctcgttgatcgagcgccgaggtcgcgatgaagccacaggtgaggtc
atgtcccttgtgggcaaactggtgggaagtaagatgggcgaccgagctcaaagaacaaaa
cctccgatgcaggaagagagaaagattaagcgacagaaacgtgacgatgcccgctacgac
atgaacaagttcaaaggtcaaactttactgtcccagggcatagaggacatggttgggatt
tactacagaccaaagactcaggaaaccagaaatacatacgaggcattgctgagtttcatt
caggccgccattggggatcagccaagagatatcctatgcggagcagccgacgaggtatta
gcaaccctcaagaatgagcacagcaagaacaaggacaagaagaaggaactggaaatgttg
ttgggatccttggctgaggaaagattcgccttgcttgtcaatctgggcaagaaaataaca
gactatggatcggagaaagaaaagaaagctattgaggaggagggaatcgatgaaacattc
ggagtaaacgttcagtttgaggcttcagaagatgatgatgaccccgacgactgtggagag
gtaaaaaatgaagagtctgaggacgatgatgatgaaggaggaatggacaccggttacggt
ggtaccctgtccacaagtcttggtggaagcgaggcagccatgggtatgtccaagaaggat
cttcacccacgggacattgacgccttctggctccagagacaactcagtaagttctacgac
gaccccaacgtgtctcaagcacgctcctcagaggtcctggacatactgaagaaagccgca
gacgacggacaagttgagaatcagctggtgatgctactcggcaccaaccagtttgatttc
atcaaggtgctgagacaacatcgaaaaatgatcctgtattgcaccttactgagccgcgcc
caagatgccaccgagaaacagcgaatcgaagacaagatgaagtttgaccccaccctcgcc
ccgatcctccaagccctgactgagacggacaaggaagacatcatcaaggaggagagagcg
aggcgtgcagctgcgaggcagtccaaggtggatgctgacctggatgccatggaaacagac
gaaccggaaaatgtattacagccaacagagatgcttgatattgatgacctagtcttcgct
caaggcggtcatcttatggccaacaagagatgtcaacttcctgatggctcgttccgtaaa
caacgcaagggatacgaggaggtccacgttcctgcactcaaacccaaaccatttgacgac
gctgagtcattagtcccaatagagagacttcccaagtacgctcagccggcctttgagggt
tttaagagcttgaacaggattcagagcagattgtacaagtcagcgctagaaagtgatgag
aacctactgctgtgtgccccgacgggagccggtaagaccaacgtagctctgttgacaatc
ctgagagagattggaaaaaacatcaacctggacggcaccatcaataccgatgtcttcaag
atcatctacattgctcccatgagatccctggtacaggagatggtgggaaacttcaagaag
cgccttgattcatacggcatcaccgtctctgagttgaccggtgaccaccaactgtccaaa
gaccaaatccacggtacacagatcatcgtttgtactccggagaaatgggacatcatcacg
cgcaaaggcggagagaagacatacacacagcttgtgcggctcatcatcattgatgagatc
catcttctgcatgacgatcgaggtccagtgctggaggctgtcatagcaagaacaatccgc
aacattgaaacatctcaagaagatgtgcgcctcgtcggtttgtccgccacgctccccaac
taccaagacgtagctacgttcctgcgtgtcaagccggagaaggggctgttcttctttgac
aacagcttccgccccgtgccgctggaacagcagtacatcggtattacagagaagaaagct
attaagagattccagttgatgaacgagattgtgtatgagaaggtgatggaacacgccggc
aagaatcaggtcctggtgttcgtccattctcgtaaggagacagggaagacggctagagct
atccgagacatgtgtttggagcatgacacgctcggtcagtttctacgtgaagggtcggcg
tccaccgaagtactccggacagaggctgaacaggccgagaacctggagttgaaagacctc
ctgccgtatggttttgccatccatcacgccggtatgaatcgtgtagatcgagccctggtg
gaggatctgtttgctgatcgtcacattcaggtgctttgttcaacggcaacgctggcctgg
ggtgttaacctgccagcacatacagtcatcatcaaaggaacacagatctacaatccagag
aaggggcgttggatcgagctgggtccattggacgtactccagatgttggggcgtgcaggg
cgccctcaatacgatacaaagggagagggtattctaataacaggccacagtgagctccag
tattatctgtctctccagaatcagcagcttcctgttgagagtcaattcgtgagcaagctc
ggcgacaacctcaacgcggaagtcgtcctcggcaacatccagacgatgaaggacgccgtc
acctggctcggttacacctacctgtacatccgcatgatgcgcaacccaaccctctacggg
ataccggtcgacggcaaggattccgatccgtacctggagagccatcggattaatctgatc
cacacggcggcgtgccagctggataagaacaacctggccaagtacgaaaggaaatctgga
catttccaggtgactgagttgggtcgcattgccagccactactactgcaccaatgactcc
atctcaacctacaacagtctcctgaaaccaaccctgagtgagatagacttgttcagggtc
ttctctctctctagtgagttcaggaacatggtcgtcagagaggaagagaagcttgagctg
actaaactgctggagagagttccaattcccatcaaagagagtattgaagaaccgagtgca
aaggtaaacgtcttgctccaagcatacatatctcagctcaaactggacggattcgctctg
gtgtctgacatggtctacatcacacagtctgctggcaggctgatcagagccatctttgag
attgttcttcacagaggttgggcacaactgacggacaaaaccatgtcactggctaagatg
attgacaaacgaatgtggcagtcgatgaacccactgagacaattccgcaagattcccgag
gaggtcgtgcgaaagatcgagaagaagaacttcccctgggagcgattctacgacctgggc
cccaacgagatcggtgagctcatccgcatgcccaagatgggcaagacgctgcacaagtac
gtccatcagttccccaagcttgagctggccacccacattcagccgatcaccaggagcacg
ctaagggtcgagctgaccatcacaccagacttccagtgggaagaaaaggttcacggcaat
tcagaggcattctggatcttggttgaggatgtggacagtgaaatcatcttacatcatgaa
tacttcttactgaagggcaaatttgctcaggacgagcacgtcgtcaagttcttcgttcct
gtctttgagccgctaccccctcagtatttcatccgtgtcgtatcagatagatggatcgcg
tccgagacgcagctaccggtttcctttcgtcacctcatcctccctgagaagaaccctcca
cccacggagcttcttgaccttcaagcccttcccgtctccgccctgaggaacaccgccttt
gagacgctgtacaacagtaaattctctgtcttcaaccccatacagactcaagttttcaac
gctgtatacaacggagacgagaacgtgtttgtgggtgcacccacagggagtggcaagacg
atcatcgcagagtttgccatcttgagaatgttgtctcagtcagcggaaggtcgatgtgtc
tttgtgactcccctggaagccctggctgaacaggtttacgctgaatggcacgccaagttc
caaatgcagctaggcaagagggtggtcctactgaccggagagacaagcacggacttgaag
ctcctggcaaagggcaacatcgtcatcagcacgccagagaaatgggatgttttgtcacga
cgatggaagcagcgcaagaatgttcagaacgtacatctgttcatcgtggatgagttgcat
cttattggtggtgacaatgggccggttcttgaagtcatctgctcccggatgcggtacatc
tcctcccagattgagcgcaacatccgcctcctcgcgttcagctcctccttggccaacgct
aaggacgtagcccagtggctaggagcaagcaccaccaacaccttcaacttccatcctaac
gtcagaccggttccactggagatgcacatccagggtttcaacatcacccacactgcctcc
cgcctcatcgccatggtcaaaccgacctacaacgccatcctgaaatactcgcccaacaaa
cccgtcatcgtctttgtgccatcgcggaagcagaccaagctgacggccatcgatctcctg
acatacgcgtcagccgaggacaccgaggacagtcgcttcttacatgtagctaaggaggac
ctcgctggccacctcagcaaggtcaacgatgagacgctttgtgagatgctggaaaacggc
attgcctacctccacgagggtctctcggacatggagaagaaggtcgtggagcaactctac
acctcaggcgccatccagatcgtcgtcgctgccaggaacatgtgctgggggatgaccttc
cccgcccacctggtggtcgtcatggatacgcaatactacaatggaaagatacacgcgtat
gtagattaccctgtgactgatgtcctacagatggttggacgagcaaatagacctgacatt
gaacatgaagttggcaagtgcgtcatcctgtgtcaaggttcaaagaaagacttctacaag
aagtttctgtacgagccccttccagtcgagtctcatctggatcattgtcttcatgatcat
ttcaacgctgaggtggttaccaagacgattgaaaacaaacaggatgcagtggactatctg
acctggacgttcctgtacaggcgtaagacgcagaaccctaactactacaacctgcaagga
gttacccatcgtcatctctccgatcatctctcggagttggtggagaacaccctccaggat
cttcagcaatccaagtgtgtcagcatcgaggacgagatggatatttccccgcttaatctg
ggcatgatcgccgcttactattacatcaactacaccaccatcgagctgttcagcatgtcg
ctcaacaacaagaccaagattaagggattgattgagattatctcctcggccgcggagtac
gagcagatcccgatcagacatcatgaggactccgtcatgaagcagcttgccagcagagtg
cccaacaagctcgctaatgctcgcttcaacgaccctcacgtcaagaccaacctgctggtc
caggcacatcttggtcgcatgcagctgtcagccgagctccagtcagatacagaagagatc
ctcagcaaggctctgaggttgatccaagcctgtgttgacgtcctctctagtaacggctgg
ttatccccagcgttggcagcgatggagttagctcagatggtcactcaatccatgtggaat
aaagactcctacttaaagcaacttcctcacttcacatcggatctcattaagaactgcact
gataagggtgttgaaagcatatttgacatcatggagatggaagatgaggaccgtaacgca
ctccttcaactcgccgacgcccagatggcagacgtggctcggttctgcaatcgctatccc
aacattgaattgacatatgaagtacaggataaagacagtctggagagtggctctcccgtt
gtggtcaacgtaattctggaaagagaagatgaagtaactggaccggtcgtagctccgttc
ttcccccagaaacgagaagaaggttggtgggtggtcatcggcgacaccaagaccaacagt
ctgatctccatcaagcgtttgaccctccagcacaaggccaaggtcaagctggactttgtg
gctccgtcccctggcgttcacaactacaccatctactacatgagcgacgcctacatggga
tgcgatcaagagtacaagttcagcatcgagatcagagaagcaagagactctagcagcgaa
gacagtgatgaggacagctcggatgaggaatag
DBGET
integrated database retrieval system
