Asterias amurensis (Northern Pacific seastar): 139941228
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Entry
139941228 CDS
T10870
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03020
RNA polymerase
aamu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
139941228
09124 Replication and repair
03420 Nucleotide excision repair
139941228
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamu03021
]
139941228
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139941228
Enzymes [BR:
aamu01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
139941228
Transcription machinery [BR:
aamu03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
139941228
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
139941228
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_4
RNA_pol_Rpb2_3
RNA_pol_Rpb2_5
DUF5817
Motif
Other DBs
NCBI-GeneID:
139941228
NCBI-ProteinID:
XP_071793802
LinkDB
All DBs
Position
8:5744507..5755721
Genome browser
AA seq
1179 aa
AA seq
DB search
MYDPDEEVYEEDDSDEVTQDRWQEACWIVISSYFDEKGLVRQQLDSFDEFIQMSVQRIVE
DAPAVDLQAEAQHTTTEAEIPTRYVLKFEQIYLSKPTHWEKDGSPSPMMPNEARLRNLTY
SAPLYVDIMKTVIQDGEETSETQHLKTFIGRIPIMLRSTYCLLSGLTDRDLTELNECPLD
PGGYFIINGSEKVLIAQEKMATNSVYVFCKKDSKYAFTAECRSCLENSSRPTSTIWVHLM
AKGGQGSRKSAIGQRIAAILPYIRLEIPIMIVFRALGFVADRDILEHIVYDFDDPEMMEM
VKPSLDEAFVVQEQSVALNFIGARGAKPGVTKERRIKYAREILQKEMLPHVGVSDFCETK
KAYFLGYCVHRLLLAALGRREVDDRDHYGNKRLDLAGPLLAFLFRNLFKNLLKEVRMYSQ
KFIDKGKDFSVELAIKTRIITDGLKYSLATGNWGDQKKAHAARAGVSQVLNRLTFVSTLS
HLRRLNSPVGRDGKLARPRQLHNTLWGMICPAETPEGHAVGLVKNLALMAYISVGSQPSP
ILEFLEEWSMENLEEIAPSAINEATKIFVNGCWVGIHRDPEQLMNTLRKLRRQMDIIVSG
GVSMVRDIREREIRIYTDAGRICRPLLIVEHQKLLLKKRHIDMLKEREYNNYSWQDLVAS
GVVEYIDTNEEETIMLAMTPDDLIEKGSMYCSTYTHCEIHPSMILGVCASIIPFPDHNQS
PRNTYQSAMGKQAMGVYITNYHVRMDTLAHVLYYPQKPLTTTRSMEYLRFRELPAGINSI
VAIASYTGYNQEDSVILNSGAVDRGYFRSVFYRSYKDSESKKMDQDEVFEKPTRETCKGM
RPAVYDKLEEDGIIPPGSRVSGDDVLIGKTVTEPEDDDELDGGSRRFTKRDCSTFMRRTE
TGIIDQVMLSINQEGYKFCKIKVRSVRVPQIGDKFASRHGQKGTCGMKYRPEDMPFTCEG
ITPDIIINPHAIPSRMTVGHLIECLQGKVSSNKGEIGDATPFNDSVNVQKISNLLHEYGY
HLRGNEVLYCGFTGRKIGVQVFLGPTYYQRLKHMVDDKIHSRARGPVQILNRQPMEGRSR
DGGLRFGEMERDCQISHGSAQFLRERLFEVSDPYRVHVCNLCGLIAIANLRNNTFECRGC
KNKTQISQIRLPYACKLLFQELMSMSIAPRMMVMPEGKA
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtatgatccagatgaagaggtgtacgaagaagatgactcggatgaggttacccaagac
agatggcaagaggcctgctggattgtcatcagctcttactttgacgagaagggtctcgtg
cgccagcagcttgactcgtttgatgagttcatacagatgtccgtgcagcggattgtcgag
gacgcgccagctgtggacctacaagctgaggctcaacacacaacgacggaagcagaaatt
cctacacggtatgtgctgaagtttgagcaaatctacctgtccaagccgacacattgggag
aaagatggttccccaagtcccatgatgccaaatgaagccagactacgaaatctcacgtac
tcagcaccgctgtatgtagacatcatgaagacagtgatccaagatggtgaagagacttca
gagacgcagcatctcaagacattcatcggcaggattccgattatgctccgctcaacatac
tgcttgctaagtggcctgacagatcgtgatttgactgagttgaatgaatgtccactggac
cctggtggttacttcatcatcaatggctccgagaaggtcctgattgcgcaagagaagatg
gccaccaactctgtctatgtgttttgcaaaaaggactccaagtacgcgttcactgctgag
tgtcggtcgtgtttggagaattcgtcccgtcctaccagtaccatatgggtacatctcatg
gccaagggtgggcagggttcaagaaagagtgccattggacagcgtattgcagccatcctt
ccatacattcgtctggagattcccatcatgatcgtcttcagagctttggggtttgtcgct
gatcgtgacatcttggagcacattgtctatgacttcgacgatccagagatgatggagatg
gttaaaccttccctcgatgaagctttcgttgtccaagagcagagcgtagcgctgaacttc
attggagctcgtggtgccaaaccgggtgttactaaggagcggagaatcaaatacgcccgg
gagatcttacagaaagaaatgttgcctcacgtaggagtcagtgacttctgtgaaaccaag
aaggcctacttcttagggtattgtgtgcacagactccttcttgcagctctgggtcgtaga
gaagtcgacgatcgtgatcactacggtaacaagagactggatctggccggcccccttctt
gcgttcctcttcagaaacctcttcaagaatctcctgaaggaagtccggatgtactctcag
aagtttatcgacaagggcaaggatttcagcgtagagttggccattaagacacgcatcata
acagatggtctcaagtactccctagctactggtaactggggtgaccagaagaaggctcat
gctgccagggctggtgtctctcaggtgctaaacagactgacgtttgtgtcaacactgtcc
catctccgtagactcaactctcccgtcggccgagacggcaagctggccagaccccgtcag
ttacacaacacactctggggtatgatatgccccgctgagacgccagagggtcatgctgtg
ggtcttgtcaagaacctagcccttatggcgtacatctctgtgggctcccagcctagcccc
atcttggagtttcttgaagagtggagcatggagaatctggaggagattgcaccttctgct
attaacgaagccaccaagatctttgttaacggctgttgggtgggcatccatcgtgaccca
gagcagctgatgaacaccctgaggaagcttcgtcgccagatggatatcattgtctcggga
ggggtgtccatggtcagagatatccgggagagagagatccgaatctacacggacgccggt
cgtatctgtcgaccgctcctcatcgtggaacatcagaagctcctcttgaagaagagacat
atcgacatgttgaaagaacgagaatacaacaactacagttggcaagaccttgtcgccagt
ggtgtcgttgaatatatcgacaccaatgaggaagagaccatcatgctggcaatgaccccg
gatgacctcatcgagaagggatcaatgtactgttcgacctacacccattgtgagattcac
ccgtccatgattcttggcgtgtgtgcgtccattattccattccccgatcacaaccagtct
ccacgtaacacctaccagtccgctatgggtaagcaagccatgggcgtctacatcaccaac
taccacgtccgcatggacaccctggcccatgtgctgtactaccctcagaagcctttgact
accacacgttccatggagtaccttagattcagagagctgccagctgggatcaactccatc
gtggctattgcgtcatacacaggctacaaccaggaggattccgtcatcttgaactctggt
gctgtggatagaggctatttcagatctgtgttctaccgttcatacaaggattctgagtcc
aagaagatggaccaagatgaagtctttgagaaaccaacacgagaaacttgcaaaggtatg
cgtccagccgtctatgataagttagaggaagatggaattatccctcctggttctcgggta
tctggagatgatgtcctgatcggaaaaacagtgacagaaccagaagacgatgatgagctt
gacggaggcagtagacggttcacaaagcgtgactgcagcaccttcatgcgacggaccgag
acagggatcatagaccaggtgatgctcagcatcaaccaagagggatacaagttctgcaag
atcaaggtgcgatctgtacgcgttcctcagattggagataagtttgccagtcgtcacggt
cagaaaggaacatgcggtatgaagtacagaccagaggacatgccgttcacctgtgagggt
atcaccccagatatcatcatcaacccccacgctatccccagtcgtatgaccgttggtcac
ttgatcgagtgcctccaggggaaggtttcctctaacaagggtgagatcggtgacgctaca
cccttcaatgactctgtcaatgtgcagaagatctccaacctactgcatgaatacggctac
cacctgagagggaacgaggtgctatactgtggttttactggtaggaagattggagtgcag
gtgttcctggggcccacctactaccagcgtctcaaacatatggtggatgacaagatccac
tccagggcaaggggaccggtgcagattcttaacagacagcccatggagggcagatctcgt
gatggcggtcttcgttttggggagatggaacgtgattgtcagatctcccacggctcggcg
caattcttgagagagcgtctatttgaggtgtccgatccctaccgagtccatgtgtgcaac
ctgtgtggcttgatcgccatcgctaacttgaggaataacacattcgagtgtagaggctgt
aagaacaagacacagatttcccagatccgtctgccgtacgcctgtaagcttctcttccag
gagttgatgtccatgagcattgccccaagaatgatggtcatgccggaaggaaaagcctga
DBGET
integrated database retrieval system
