Asterias amurensis (Northern Pacific seastar): 139941473
Help
Entry
139941473 CDS
T10870
Name
(RefSeq) regulator of nonsense transcripts 1-like
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03013
Nucleocytoplasmic transport
aamu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139941473
03015 mRNA surveillance pathway
139941473
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139941473
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139941473
5.6.2.5 RNA 5'-3' helicase
139941473
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
139941473
mRNA cycle factors
Common to processing body (P body) and stress granule
139941473
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
AAA_16
NAT10_TcmA_helicase
UvrD-helicase
DEAD
nSTAND3
ATPase
SRP54
AAA_22
PhoH
DUF269
AAA
AAA_25
Motif
Other DBs
NCBI-GeneID:
139941473
NCBI-ProteinID:
XP_071794095
LinkDB
All DBs
Position
9:4086299..4101607
Genome browser
AA seq
1140 aa
AA seq
DB search
MSVDAYGPSSQSLTFLDTEDGELLGADTQGTDFEYNVGDFTLPSQTQTQSQASQLDVVSQ
SQSQVGLSLDAKPVQNGFVEDNVAATVQTLKDLTFEEDEEETYYTKDLPDHACRYCGIHD
PSAVVLCNSTKKWFCNGRGNTSGSHIINHLVRAKCKEVTLHRDSPVGETALECYNCGCRN
VFLLGFIPAKVDSVVVLLCRQPCATQSNLKDMNWDPTQWQPLIQDRCFLSWLVKVPSEQE
QLRARQISAAQINRLEELWKNNAEATLEDLEKPGADEEPASVMLRYEDAYTYQNIFGPLV
KMEADYDRKTKENQNQSNMSVRWDIGLNRKTRAYFNFPKKEDLKLMQGDELRLRYLGDLQ
EPWSGVGHVVKIPDNYGDEICVEIKISAKVPVNCINNFVVDFVWKSTSFDRMQSALKTLA
VDETAVSSFLYHKLLGHEVENMVIKSNLPKRFSAPNLPELNHSQVSAVRMVLTRPLSLIQ
GPPGTGKTVTSASVVYHLAKQGQGQVLVCAPSNIAVDQLTEKIHRSGLKVVRICAKSREA
IESPVSFLTLHRQVRNMEGNEEQQKLQALKDEIGELSSADEKRFRALKRNNERELLQNAD
VICCTCVGAGDPRLARFRFRAVLIDESTQATEPECLIPIVLGCKQVILVGDHCQLGPVVM
CKKAANAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVAAGDRI
NKAVEFPWPQRDKPMFFYATAGQEEISSSGTSFLNRTEASNVEKITTCFLRAGVKPDQIG
IITPYEGQRAFIVQYMQYSGPLNVKLYQEIEIASVDAFQGREKDYIILSCVRANDHQGIG
FLNDPRRLNVALTRCRYGVIIVGNPKVLSRHPLWNHLLTYYKEHKVLVEGPLNNLKESLI
QFSKPRKLVNTTNPGGRFMTSAMFSAKEAMIPGSIYDRSGMMNGGSSRFVHGPGRIHDQM
GYIGPGPAQFAGANLPVPVNMFMPPPPQPGNHFYNQGMPGPPMGGHMPQQRGKGAPPYSK
RRGKPPGQQGQGKGSQQGMGGASQPGNSSQNMSQYNLSMQSQDGSMPFSQGPLTQGMSMS
QPGLSQAGFSLPGLSQPGLSQPELSQDSYLGEEFKSQMDAALSQDSTYQGDRNYQHGFGY
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgatgcgtacggtccgagctcgcagagcttgacttttctggacacggaagac
ggcgagttactgggagccgacacgcaggggacggattttgagtataatgtaggggacttc
accctgccgtctcagacgcagactcaaagccaggcatcacagcttgatgtcgtgtctcag
agtcagagccaagttgggttgtctttggatgcaaagccagtacagaatggctttgttgag
gacaacgttgcagctacagtacaaacactgaaggacttgacctttgaagaagatgaagaa
gagacgtattacaccaaagacctacctgatcatgcatgcaggtattgtggcatccatgat
ccatctgcagtggtattatgcaactccactaagaaatggttctgcaatggccgtggcaac
acctcgggaagccatatcatcaaccacctcgtgagggccaagtgtaaggaggtcaccctt
caccgcgacagtcccgtaggagagactgccctcgagtgttacaactgtggatgtcgcaac
gtgttcctactgggtttcatccctgctaaagttgactcggtcgtcgtgctgctttgccgc
caaccctgtgccacccagagcaacttgaaggacatgaactgggacccaacccagtggcag
cctctgattcaggatcgctgcttcctcagctggttggtcaaggtcccctcggagcaggag
cagctcagagccaggcagatctcggccgctcagatcaatcgactggaggaactgtggaag
aacaacgcagaagccacgctggaagatctggagaaaccaggagctgatgaagagcctgct
tcggtcatgttgagatatgaagacgcttacacctatcagaacatcttcggtcctctggtg
aagatggaggcagattatgatcgcaagaccaaggagaatcagaatcagagcaacatgtct
gtacgttgggacatcggactcaatcgcaagaccagggcttacttcaatttccctaagaaa
gaagatttgaaattgatgcagggagatgagttgaggctgcgctaccttggtgacttgcaa
gaaccttggtcaggagtgggtcatgtagtcaagataccagacaattatggagatgagatt
tgtgttgagattaagataagtgccaaagtacccgtcaactgcatcaacaactttgtggtg
gactttgtgtggaaatccacatcttttgacagaatgcaaagtgccctgaagacgctggca
gtggacgagacggccgtgtctagtttcctgtatcataaactccttggtcatgaggtggag
aacatggtgatcaagagtaacctgcctaagcgattctccgcacccaatctccccgagttg
aaccactctcaagtgtctgctgtgcgcatggtgctcacacgccctcttagtcttattcag
ggcccacctggtacaggaaaaactgtcacatcggccagtgttgtctaccatcttgccaag
caaggacaggggcaagtgttggtgtgtgcacccagtaacatcgctgtggaccaactgact
gagaagatccatcgttctggattgaaggtggtcaggatatgtgccaagagtagagaagct
atcgagtcaccagtctcgttcctcacactccacagacaggtgcgaaacatggaagggaac
gaggagcagcagaaactacaagctctgaaggatgagatcggagaattgtccagcgccgac
gagaaacgcttccgtgcgctgaagaggaacaatgagagagaactcctccagaatgctgat
gtgatatgctgtacgtgtgtgggagcaggggaccctcgtcttgcccggttccgattccga
gccgttctcatcgacgagagtacgcaggccacggaacccgagtgtctcataccgattgtg
ctcggatgcaaacaggtcatcttggtaggggatcattgtcagctaggcccagtggtcatg
tgcaagaaagcggcaaacgccggcctctcacagtcgctcttcgagcgtcttgtggtcctg
ggcatccgaccaatcagattgcaggttcagtatcgtatgcacccggccctcagcgctttc
ccatccaacattttctacgagggatctctgcagaatggtgtggcagctggtgatcgaatc
aacaaggcggtggagtttccctggccccagcgagacaaaccgatgttcttctatgccacg
gctggacaagaggagatctccagctccggtacctccttcttaaacagaacggaggcgtct
aatgtcgaaaagatcacaacatgtttcctgcgtgccggcgtcaagcccgaccagattggc
atcatcacaccctacgagggccagcgtgcgttcatcgtccagtacatgcagtacagcggc
cctctgaatgtcaaactctaccaggagatcgagatcgccagcgtcgacgctttccaggga
cgggagaaagactacatcattctgtcgtgtgtccgtgccaatgaccatcagggcatcggg
ttcttgaacgacccacgccgtctgaatgttgctctgactcgctgcaggtatggtgtgatc
atcgtgggtaaccccaaggtcctgtcacgtcacccactgtggaatcaccttctgacctac
tacaaggagcataaggtcctggtcgaaggacctcttaataacctgaaggagagtctgatt
cagttcagtaagccaaggaagctcgtcaacacaacaaacccaggtggtcgttttatgacg
tctgcaatgttcagcgccaaggaggccatgataccaggcagtatctatgatagatcaggc
atgatgaatggaggatccagtcgttttgttcatggaccaggccgtatccacgaccagatg
ggttatatcgggccaggccctgcccagttcgcgggggccaacctcccagtaccagtcaac
atgttcatgcctccaccccctcaaccaggcaatcacttctacaatcagggcatgccgggg
ccaccgatggggggccacatgccacagcagcgggggaagggtgccccgccatactccaag
aggaggggcaagccacccgggcagcaggggcaagggaaaggctcgcaacaaggaatgggc
ggggctagccagccgggcaactctagccagaatatgtctcagtacaatctctccatgcag
agtcaggatgggtcgatgccattctcccagggaccactcacccaaggcatgtcgatgagt
caaccgggcctatcccaggctggcttctccctgcctggtctctcccagccaggcctgtct
cagccggagctgtcacaggacagctacctgggagaagagttcaagtcccagatggatgca
gcactgtctcaggactccacctaccagggtgatcgtaactaccagcacggcttcggttat
tag
DBGET
integrated database retrieval system
