Asterias amurensis (Northern Pacific seastar): 139941847
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Entry
139941847 CDS
T10870
Name
(RefSeq) spatacsin-like isoform X1
KO
K19026
spatacsin
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Brite
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Other HR factors
139941847
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spatacsin_C
Beta-prop_ELP1_1st
CARD
Motif
Other DBs
NCBI-GeneID:
139941847
NCBI-ProteinID:
XP_071794576
LinkDB
All DBs
Position
9:5201268..5236683
Genome browser
AA seq
2598 aa
AA seq
DB search
MAVSAHSFPVSLHKLTISVEPEEILSLHYIAHGSALIVHYVNGNVEVLTVEEEGENSTVI
DQNILQIRVQRSEATVESKTCEASLLVLSNDYSLTVHHLSINSDQLKVTVSHSVKCAKQQ
LQQILCNDTKEGLPDPSCINVLAFESSSSTLLFDHSVLKLSFNPDIRPELKEHIELVWDP
KEGSVIDSKLLHGLVFLLHQSGVISVHSLSRRLLVATVHFQKFLRHLYPSANPETLKPLH
PDSLDVSPDLQYLILTQQQAKYNIYKLNLTEYFNAYPYHVKVQRSFQFTSSSGDGREVAD
EDEMVYMHGRVKVQVVGTPGNRTWLSMLSTASKKLSGDRGSDGGQAEVNWLERVGVTELT
HSKLHLTSSVVNSKKLPGRISGFQKPQTRHDSMSFYRPKIYIQTNQEDEACRPSAAVRAS
KAFRDLKVTGMLITKNCAALWYRGNTKLDVGRGRYGGVCLLDLATSDIDYHSFTEPVVVT
FSQDSSHQYLILSRTGIEALAYGVDQETLVNKLMIYSSASLAETVCHLNHWDHYSIPIHA
LEVGLKQRQLDTVAFFLKSRENVFKYSPTPSSPTYGAPRSPSPLTADQTQLWSAIDLLIT
SIRDHIQAHQSRQYAMQLLNLTLAYVNKLIENATETLKAVQQGEGLEVLGGFNLTGTVLK
EALVKLMGYVKELWVYLKGCPKWIGAQAKDEAKSEDEVDSVSPNYFEPDGKTAQKYTKKW
KKMSQEEVIKDAILGRCLPLALAHLRSSYGGSEVKVQMSDLADKGLHLMLGSLLQSDLQT
ATKLLQNMGYNVQTQLKKMCLYTVNSNLRDFLIDHLRQSGSFTTEEEGMITFIHQLERLY
TCQSFDKAKALALESGKRKWAGMVTPRHSLNAWAQNLLETRLQRGELVMCETPNCENFHY
AHIPLEWVRTWDHEIRERVLLDVLIKSKDTSLRPSLDAKSIWSYLTSHCDWKHLSDWIAA
SAPGSSSKPEYLNPVLTQALYAHGADELEACPGYLREKILDALASRNIFSSLELEKFNLL
LTRLSRTLQLFSDTPFQDNRDLREKFSQWFINLCLKEQLTSVLYLFLDFYRLYLSENEVV
SQVSDNRWLEMLLHFRWVGRQTTDPSLMFQASLSNSHLLLGDVQPTISQLFEAGHPVVAL
ATLIYAPGTFSEAMIPALSVEEKIWKVDGEVMKEALKQYPKLQAAVFPPIDVDGVSKQDI
TVYQLLQGNCPYDPAKLFKWQTTNPMGNKQNGTEMPHFSQAHLVSQYAYTEAFRFTYYLY
QGRPSFAYLAFVTSQLQDGGTLTKKRVLQAYLKAYSIAIRHLSDRTIASACVAFVEMLGQ
DSMSIRIDLQAASAVLEKKSTHGDSGGKARKDQELEQNLVRMLLACLQGSGNAKELLQLL
EDAITYKLNLAKTKLTSWEASEEWTLAILFCRRHQLPLSEVYPSQCASDNQWLHFTCFVQ
AHQYPKEQVLDLLKKFSSTTVREHLHDAFRNLHFGPALIRDDLQGVRQRPLSSQRVRDVK
AHYYHRVGFLRRRTADMSSEDDTTCGSDDALSTDDSTTQPSTAPLELNISRVPKDLFSVL
FECNTSPVPWKSLLAHAVILGEPVLAIIASCYKDCVPLDCLCTWLLSSLDDPTSTNKVTG
SMTSVQWHSWTLEELTLIVEVAMTAGLVTLLAKGFYIFDKDCALNSFLNFCEAMLVKCDT
SRAKIFLQDFKAAILKCRRKGISGSGSQSPRTSADFKIGNLKWFEETASAVVLSMVVTST
TYWDTCSLLEVLAHANFSRIVSRQAPDFNKLHKVTQALTDTPIQAQITRLVSVNETEYTA
ECNRVLQCLKETKSFKKAKEFASVAGLPVDQVIVEQLLFDLNDLQRSKVWNAESGRMIFW
KTCHNTFKANRVSGSTASTFFQNQVNEQKDLHAREKATLLSLAQRWLSNETSTTSQVKAA
AERLQQEAWSWRLRAEVEKVETSSVPPSLIEGAFTTGPDDRFGDVDCKCLISEELLYVAD
VKVNPYSPPILKDEKEVAALNLILGNLLDKCCIKKAYQLAKQFNHYHEDLSIILTSIQLA
MGLIAANQMKPDMKRMVAEVGSRSLGGGGGRRSRKMSDAWKGMMSRGMLTRSASTVSMTS
MASLDQYEEELDETLNTMESLSANCSSQAKQCCNRVINAYRIGQILGSSYKSVVVQAPFD
SLRSILRCSHPQRFAISKTFILANEMTDIQVAGFLCEAVVTSLKARHPKRREGLGATSRF
PSSPSLGSYISQDLSEKEEFSQLIQLCRNPAILGNRLLQEATSLVSSDAGNSKSVLTMEV
ELIIRAHDCHTVCCNMEGISNVLRKCRECSDALTQSEEFTLLVRLLTGVGRYCEMSYVFD
VLRANQQFELLFKRGGKDTKLKVALLDYLKRCDPPDTEAYNFVAVKFEMNREIAELLMRD
AQEQLQSFNKKAMGANIELQNSLQNVLQDFTKAAQSYAKDNCLRHAEQCVKQARLVALQL
HLLPTKQHVINLDSKALTSFMNKHTKFHEALIVADAYGMMQSLWSDAIYYVVVMQGDFQY
LEDYSVCKPLDGSLFRDVANKYRQESSRLFQASTNMKKFLSYCSEVLTAYKIATELGFQD
LAVSLLEGEAGSYLKDVA
NT seq
7797 nt
NT seq
+upstream
nt +downstream
nt
atggctgtttccgcccacagcttcccagtttcgctgcacaaattgacaatttctgtcgag
ccagaagaaattctgagtttacactacattgcacatggcagcgctttaatcgtacattat
gtaaatggaaatgttgaagtcctgactgtcgaagaagaaggagaaaacagcaccgtgatt
gatcaaaacattctgcaaattcgggttcaacgcagtgaagcaaccgtagagtctaaaacc
tgtgaagcttctctccttgtccttagtaacgactacagtctaactgtacatcatttatcc
atcaattccgatcaactcaaagtgactgtgtctcactcggtaaaatgcgccaaacaacaa
ttacaacagattctatgcaacgacacaaaggaaggtctcccggatccatcctgcatcaat
gtcttggcctttgaatcctcttcttcaactctcctctttgatcactccgtcttgaaatta
tccttcaacccggatataagacctgagctcaaggaacatatcgagttggtctgggacccc
aaagaaggcagtgtaatcgatagcaaactcctacatggactggtgtttctattgcaccag
tctggtgttatctctgtacattccctgagtaggaggctgctggtcgccacagtccacttc
cagaagttcctccgtcatttatacccgagtgctaatccggagaccctgaagcccctccat
ccagacagcctagatgtcagccccgacctacagtacctcatcctgacccaacagcaagca
aagtacaacatctacaagctcaacctcaccgagtacttcaacgcatacccttaccatgtc
aaagttcagaggtcatttcagttcacctcttcatccggcgacgggagagaggtcgcagac
gaggatgagatggtatatatgcatgggagggtcaaagttcaggtggttggaacgccgggg
aatcgaacctggttgagtatgctgtcgacggcttccaagaagttatcaggagatcgtggg
tcagatggaggtcaggcagaggtcaactggcttgagagggtcggtgtgactgagttgact
cactcaaagttacatctcacatcgagtgtcgtcaactctaagaagcttcctggtaggatt
tcaggtttccagaagccgcaaactagacacgactccatgtcattctaccgacccaagatc
tacatccagacgaaccaggaggatgaggcttgcaggccctcggctgcggtcagagcttcc
aaagccttcagggacctaaaggtgactggaatgctcatcacaaagaactgtgccgctttg
tggtatcggggtaatactaagctcgatgtcggtaggggacggtacggtggagtatgcctg
ctggatctggcaaccagtgacattgattaccatagctttacagagcctgtcgtcgttacc
ttctcccaagattccagccatcaatatctcatactgtctagaactggtatagaagcactc
gcttatggagttgatcaggaaactcttgtcaataagttgatgatctacagcagtgctagt
ctagctgagactgtttgtcatttaaaccactgggatcattactctatacctatacatgct
ctggaggtcggtttaaaacaacgccagctggacaccgtggcattcttcctcaagagtaga
gaaaatgtgttcaagtatagtcctacacctagctcccccacctatggggctccacgctct
ccctccccactgaccgccgatcaaacccaactctggtcggccattgacctcctcatcacc
tcaatccgcgaccatatccaggcgcaccagtctcgccagtacgccatgcagctcttgaac
ctaaccctggcctacgtcaacaagctgatcgagaacgctacggagacgctgaaggcggtg
cagcagggggaggggcttgaggtcttgggcggcttcaatctgactggaacggttctcaag
gaggcgttggtaaagctgatggggtacgtgaaagagctgtgggtgtacctcaaagggtgt
ccaaaatggattggggcgcaggctaaggacgaagccaagagtgaagacgaagtagattca
gtttcaccaaactactttgagcccgatgggaagacagcccagaaatacaccaagaagtgg
aagaaaatgtcacaagaggaagtaattaaagatgccatccttggacgctgcctacctcta
gccctagcccatctacgcagttcctacggtgggtcagaggttaaagttcagatgtctgac
ctggctgacaagggactccaccttatgctgggttcactgctacagagtgaccttcaaact
gcaaccaaattgctccaaaacatgggctataatgtgcagacgcagctcaagaaaatgtgc
ctgtacactgtcaacagcaacctcagagatttccttattgaccatctccgccaatcagga
tcatttactactgaggaagagggtatgattaccttcatccaccaattggaacgcttgtac
acctgtcaatcatttgataaagctaaagcattggctctggagagtgggaaaaggaaatgg
gccggtatggtcaccccaaggcactccctgaatgcatgggcgcaaaacctccttgagaca
agactacagcgaggggaactggtcatgtgtgagacgccaaactgcgagaacttccactac
gctcacatcccccttgagtgggttcgaacctgggaccatgagatcagagagagggtgtta
cttgatgtgcttattaaatctaaggatacatcgttgcgaccttctctggatgctaagtct
atttggagttacttgacaagccactgtgactggaaacacttgtctgattggatagcagct
agcgccccgggcagctctagtaagcctgaatatctcaatccagtactaacacaggcatta
tatgcacacggtgctgatgaactagaggcttgcccaggctatctgagagagaaaatactg
gatgcattggcaagtcgtaacatcttctcgtcgttggagttggaaaagtttaatctactc
ctgacgaggctcagtcgtactctgcagttattctcagacactccattccaagacaacaga
gacctgagagagaagttcagtcaatggttcatcaatctgtgtcttaaggagcagctgact
agcgtcttgtatctcttcttggacttctacagattgtacttgtcagagaatgaggttgtg
tcacaagtgagtgacaacagatggctggagatgcttctacacttcagatgggttggaaga
cagaccactgatccttctctgatgttccaggccagtctgtcaaattctcatctactgctc
ggagacgtccaaccaaccatatctcaactctttgaggcaggacatccagtagttgccttg
gcaacgctcatctatgcaccggggacgttctcagaggcaatgatcccagcattgtcagta
gaagagaagatttggaaggttgatggtgaggtgatgaaggaggccctcaagcagtaccct
aagctacaagcagctgtgtttccaccgatagatgtagatggagtcagtaaacaggatatc
acagtctaccaactattgcaggggaactgtccatacgatccagctaaactcttcaaatgg
cagacaactaacccaatgggcaacaagcagaatggaactgagatgccgcatttctcacag
gctcatctcgtcagtcagtacgcttacactgaagcctttcgcttcacctactacctctat
caaggtagaccctcctttgcctacttggccttcgttacgagtcaactgcaggatggaggc
acgctgacaaagaagagggtgctgcaggcctacctcaaggcttacagcattgccatcagg
cacttgtcagaccgaaccatcgcctctgcttgtgtcgcattcgttgagatgctcggtcag
gacagtatgtccattcggattgacctccaagctgcctcggctgtcctagagaagaaatcc
acccacggggatagcggaggaaaggccaggaaagaccaagaactggaacaaaatctggtg
aggatgctcctggcgtgtcttcaaggaagtggaaatgccaaagagttattgcagttgtta
gaggatgctatcacgtacaaactcaaccttgccaaaactaaactgacatcatgggaggct
tcagaggaatggacgttggcaattctcttctgtcgtcgacatcagctacctctaagtgag
gtctacccgagtcagtgtgcttcagacaaccagtggctacacttcacctgctttgtacag
gcacatcagtaccctaaagagcaggtcttggatcttctgaagaaattcagctccaccaca
gtgagggagcacctccatgatgcattccgcaacctgcactttggcccggctctcatcaga
gacgatctgcagggggttagacagcgccctctatcttcccaacgagtacgcgatgttaaa
gcgcactactatcatcgagttggattcctacgaaggagaactgctgatatgagctctgag
gatgatactacatgtggaagtgacgatgcattatcaactgatgatagtacaacgcaacct
agtactgccccactggagctaaacatcagcagagttcctaaggatctcttcagtgttcta
tttgaatgtaatacttcaccggtgccatggaagtctctactagcccatgcagtgatactc
ggggaaccagtgcttgccatcatagcgtcatgctataaggactgcgttcctttagactgt
ctctgcacgtggctgttgagctctctggatgacccgacctctacaaataaggtcactggg
tcaatgacctcggtccagtggcacagctggacgctggaagagctgacgttgatcgttgag
gttgccatgacagccggtctggtgacactcttggccaaagggttctacatatttgataag
gactgcgccttgaattcgtttctgaatttctgcgaggcaatgttggtgaaatgtgacaca
tctcgagctaagatcttcctgcaggacttcaaggctgctattcttaagtgtcgcagaaag
ggtatctcaggatcagggtctcagagtccacgaacctcagcggatttcaagattggaaat
ctcaagtggtttgaggagacggcgagcgctgtggttctatccatggtggtgactagtacc
acctactgggatacctgctctctgcttgaggtcttagctcatgcaaacttctctaggatc
gtgtcgagacaagcccctgacttcaacaagctacacaaggtaacgcaagccctgacagac
accccgatacaagcccagataactcgtcttgttagtgtcaatgagacagagtacacagca
gagtgtaacagagtcttacaatgcttgaaggagacaaagtcgttcaagaaggctaaagag
ttcgcaagcgtggccggacttcctgtagatcaagtcatcgttgagcagttgctctttgac
ctgaatgacctccagaggtcaaaggtctggaatgctgaatcaggcaggatgatattctgg
aaaacgtgtcacaatacattcaaggctaaccgtgtttcagggagtacagcatcaacattc
ttccaaaatcaggtgaatgagcagaaagacttgcacgccagagagaaagccactttgctt
agtcttgctcaaaggtggttatctaatgagaccagcacaacttcacaagtaaaagcggct
gctgagaggctacagcaagaagcctggagctggagactaagagctgaggtggagaaggtg
gaaaccagctccgtccctccttcgctgatagagggcgctttcactactggccccgatgat
aggttcggtgatgtggactgtaagtgtctcatatcagaagagttgctgtacgttgctgat
gtcaaggtgaatccttactcacctccaatccttaaagatgaaaaggaggtagcagcgttg
aatttaatcttaggcaaccttcttgacaagtgctgcatcaagaaggcctatcaactagct
aaacagttcaatcattatcacgaggacctctcaatcatactgaccagcatccagttagct
atgggcctcattgcagccaatcagatgaagcctgacatgaagagaatggtggcagaggtg
ggatcccgaagtctaggaggtggtggaggaaggcgaagtagaaagatgagcgatgcttgg
aagggtatgatgtctagagggatgctcactcgatctgcaagtactgtgagtatgaccagc
atggctagcctggaccagtatgaggaggagttagatgagacactgaacactatggaatca
ctctcagctaactgctcatcccaggctaagcagtgctgtaatagagtcatcaatgcatac
agaataggccagattcttggcagcagttacaagtcagttgtggttcaagctccatttgat
agcctgagatccatattacgatgcagtcacccacaacgctttgccatctccaagacattc
atcctggccaatgaaatgactgacatacaggtggcagggtttttatgtgaagcagttgtc
acaagcttgaaggcacgccatccaaaacgcagggaggggctaggtgccacgtcgaggttt
ccatcttcaccatcgctaggctcctacatcagccaagatctgagtgagaaggaagagttc
agtcagttgatacagctgtgtagaaacccggccatccttgggaatagactactacaggaa
gcgacgtcattggtcagctcagatgctggcaacagcaaatcagttctgaccatggaggtt
gagctaatcatcagagcccatgattgtcacactgtttgctgtaacatggaagggatctca
aacgtactcaggaagtgtcgagagtgcagcgatgccctcacccagtcagaagaattcacc
ctgctggtgcggttattgacgggtgtagggagatattgtgagatgtcttatgtctttgat
gtactccgagctaaccaacagtttgagcttctctttaagcgaggaggaaaggacaccaag
ctgaaggttgcgctactggactacctgaaacgctgtgaccctccagacactgaggcatat
aactttgtagccgtcaagtttgagatgaatcgggagattgccgagctgcttatgagagat
gctcaggagcagctgcagagctttaataagaaggctatgggtgcaaatatagaattgcag
aacagtcttcaaaatgtcttacaggattttacaaaagctgcacagagctacgcgaaggac
aactgtctgagacacgctgagcagtgtgtgaagcaggcccgcttagtggcattacaactt
catctacttccaactaagcaacatgtcatcaatctagactccaaagctctgacatctttc
atgaataaacacacaaagttccatgaggcactgatcgtagccgatgcctatgggatgatg
caatctttatggtccgatgctatctattacgtcgtcgtcatgcaaggagatttccaatac
ctggaggactatagcgtctgtaaacctcttgatggatccctcttcagggatgttgctaac
aagtatcgtcaagaaagcagccgactgtttcaggcctcgaccaacatgaagaagtttttg
agttactgtagtgaagtgttgacagcctacaagattgccaccgagctgggtttccaggac
ctggccgtgagtctactggagggtgaagcagggtcgtacctcaaggatgtagcatga
DBGET
integrated database retrieval system
