Asterias amurensis (Northern Pacific seastar): 139942239
Help
Entry
139942239 CDS
T10870
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5-like
KO
K11125
protein SMG5
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139942239
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139942239
03032 DNA replication proteins [BR:
aamu03032
]
139942239
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139942239
mRNA cycle factors
Common to processing body (P body) and stress granule
139942239
DNA replication proteins [BR:
aamu03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
139942239
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Herpes_LMP1
Motif
Other DBs
NCBI-GeneID:
139942239
NCBI-ProteinID:
XP_071795127
LinkDB
All DBs
Position
9:22196422..22242677
Genome browser
AA seq
1058 aa
AA seq
DB search
MEQEEVKVTVKPEVEKLQQIKRIYRGAQDIIAKLDNILRHRQPYRSVFEWDAIELRMKLK
DLCERLMFLQPVDYGRKAEELLWRKVYYDVISVVRKNKKHVRPGSSLECAYHTHLLAATG
FYHHLLLRLQQQYRLNLRGIVDFVDAGDHWSSRGPLPPPGSKRAKARDWSEKACHRCLIY
LGDLARYRQDFDGFRSCRQAERFYHQALLLNPAMGMPHNQLGTLAGNRHQGLDCAYHYLR
CWLSEIPFDGAIDNLEKTLEQNTKRYLELPRQINRDLPPDMQRPRDLKQFLIKFLYLQEL
LQPNAWPSQEQLATLCQTVVHDFSLCMYHTGTHRRTMPLPKATATLPRVGDTLKESTISD
DLVFKIFVMMLMTTYKLQKKERRWVSASIAFMLAMFTHLLTHVNERIQNALYEAKHPKLI
KESDDSSDESSSQTDESGNERLSIAGTLTPTHSQEVESSGTCSDGTVKRPHPKKDKRRKA
LNRRRRRPMSGRTESDDSDLSEGALSASGGSDFSSSAGEGSSEGGLLALSDSDYLMDSQD
QEEEKSPEKSKELKEEQDAGKEKTPGAKDQPSQSDKVKEWSSTSPSTLAQNLRDLSSRLL
APSPTGFLKRNIRLAPSFDAYNKERSDDQTGDKAGETGGAQDGDMSAGKSGDETIGQSGG
SSGGDSDNKPYPLELLVKVLNEERLLCTIKLITDWLRGNSDVITTTAENTQMLWSRLAIF
LNQLPPVPDICSEEWCKSSEALESIASSLQTSDGSWQQIIPLTEDIAVMKLPSLGDTQKV
MTFDLHLNHDLNERDETLLRITCLHQFGHFLTNVKGLSFSFDPEGQLFNAQASDAEDVHP
PEASSEAAGTETKPVEKDEKRNQVMRDLAVRWLEHEIQQLQDQVEDGAANTQFSPYLVPD
ANALMNHLGLIQLLADSERFIIVVPYAVVGHLDHFKKKHFEAREASRFLEQILKKGSRHI
RVQRAHEVVSLDKEKKPKDKDKSIKTLYHIIECGLYFSQRSASQGSDSHGMVTILTDYRP
GQLAASQPALGAVETAQGRGLRVENASEFYDSWKNSQS
NT seq
3177 nt
NT seq
+upstream
nt +downstream
nt
atggagcaagaagaagtcaaagtaacagtgaagccagaagttgaaaaactacagcaaatt
aaacggatttatcggggtgcccaggatatcattgccaagttagacaacatcttgagacac
aggcaaccttaccgcagtgtctttgaatgggatgctattgaactccgcatgaaactgaag
gacctttgtgagaggttaatgtttctccagccagttgactacggacgcaaagcagaggaa
cttttatggaggaaggtctactatgatgtcatcagtgtcgtcaggaaaaacaaaaaacac
gtacgcccaggatcctccctggaatgtgcctaccacacccacctgctggcagctactggc
ttctaccatcacctgttactgaggttacagcagcagtacagactgaatctacgcggtatt
gtggactttgttgatgctggagatcactggagcagtagaggtcctttaccgccgccaggt
agcaagcgagccaaagccagagattggtctgagaaagcctgccatcgttgtctcatctac
ttgggagatcttgctcgctacagacaagactttgatgggttccgtagctgtcggcaagca
gagcgattctaccaccaagccctgctgctgaaccccgcaatgggaatgcctcacaatcag
ctgggcacactggcaggcaacagacatcagggactggattgtgcctaccactacctcaga
tgctggttgtcagagataccttttgatggggcaattgataacttggagaaaacgttggaa
caaaacactaagagatatcttgagcttcctcgccagatcaaccgtgaccttcccccagac
atgcaaagacccagggatttgaagcagttcctgatcaagttcctgtaccttcaagaacta
ctgcaaccaaacgcctggccctcccaggagcagctggccactctatgccagacggttgtc
cacgatttcagtctgtgcatgtaccacaccggaacccatcgacggacgatgccacttcca
aaggccactgccaccttgccaagagtaggggacaccctgaaagagtcaacgatatcggat
gatctcgtgttcaagatctttgtcatgatgttgatgacgacgtacaaactgcagaagaaa
gagcgtaggtgggtgtcggcgtccattgctttcatgctggccatgttcactcatctctta
acgcacgtcaacgaacgaatccagaatgctctatacgaggccaagcatcccaaactgatc
aaggaatctgatgacagttcagatgagagcagtagccagactgacgagtcggggaatgaa
cgtctcagtatcgcaggcaccctcaccccaacacatagtcaggaagtagaaagctctggt
acatgcagtgacggcacggttaaacgtccacacccaaaaaaggacaagcgacgtaaagcc
ttaaacaggcgtaggaggcgccctatgtctggccgtacagagagcgatgattcagacctc
agcgaaggcgccctgagtgccagcggtggatccgacttcagctccagcgctggggaggga
tcaagcgagggcgggcttctggcgttgtccgacagtgactatttgatggacagtcaggac
caagaggaagaaaaatctccagagaagagtaaagaactcaaggaagaacaagacgcagga
aaagagaaaacgcccggagcaaaggaccaaccatcacaatcagataaagtcaaggaatgg
tcatctacgagtcctagcaccctcgcccagaacctccgagatctttcttcaaggctcctc
gccccaagcccaacaggatttctgaagcgtaacatccgccttgcccccagctttgatgcg
tacaacaaggagaggtccgacgaccagacgggggataaagcaggagagaccgggggagca
caggatggtgacatgtcggctggaaaatcaggtgatgaaaccattggccaatccggtggc
tcttcaggaggtgactctgacaacaaaccgtaccccctggagcttctcgtgaaggtgttg
aatgaagagagacttctgtgcaccatcaaactcatcactgattggctgagaggaaacagt
gatgtcatcactacaacagctgagaatacccagatgttgtggtccaggctcgccattttt
ctgaatcaacttcctccggtaccagatatttgttctgaggaatggtgcaagtcttccgaa
gcactcgagtccattgcttccagtctgcagacatcggacggctcctggcaacaaattatc
ccattaacggaggatattgccgtgatgaaactgccctcgcttggtgacacacagaaggtc
atgacctttgaccttcacctgaaccacgacctaaacgaaagagatgagacacttctgcga
ataacgtgtctccatcaattcggccattttctcaccaacgtgaaaggtttgagtttctcg
tttgatccagagggacaacttttcaatgctcaggcaagcgatgctgaagatgtccaccct
cctgaagctagttctgaggcagctgggactgagaccaaaccagttgagaaagatgaaaag
cgtaaccaagtgatgagggacctggcagtccgctggctggagcatgagatacagcagctt
caggatcaggttgaggatggagcagcaaatacacagttctctccttacctcgtccccgac
gccaatgctctcatgaaccacctgggtctcattcaactcttagcagacagtgagcgcttc
atcatcgttgtaccctatgcagttgtgggtcacttagaccactttaagaagaagcatttt
gaggccagagaggcgagtcgattccttgagcagatcctcaagaaaggaagcagacatatc
cgagtccagagagcgcatgaagtagtctcacttgacaaggagaaaaaaccaaaggacaaa
gacaagtctattaagacactctaccacatcatcgaatgcggcctctacttcagtcagaga
tcagcctcccaaggtagcgatagccacgggatggtgaccatcctgacagactaccggcca
ggtcagctggccgcatctcagccagcgcttggcgcggtggagacagctcaggggagaggt
ctgcgcgtggagaacgcctccgagttctacgactcatggaagaattcgcagagttga
DBGET
integrated database retrieval system
