Asterias amurensis (Northern Pacific seastar): 139943800
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Entry
139943800 CDS
T10870
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139943800
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamu03021
]
139943800
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139943800
Transcription machinery [BR:
aamu03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
139943800
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
139943800
U7-dependent histone pre-mRNA processing factors
139943800
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
139943800
NCBI-ProteinID:
XP_071796722
LinkDB
All DBs
Position
1:complement(5429558..5456544)
Genome browser
AA seq
1480 aa
AA seq
DB search
MDADSSRRSIASQYFMDEESSSLAEGINVSDRVIELINQAHLMTKDAQKIAHLKHVQELI
VHKDPTLLDNFLDEVLQFQLDKSADVRKFVIGFIEEACKKDNDMLCSVVPHLNSMLGDSA
QYVAVIKKIILCSMQLYKVAMKWLVNARTFGEEMEAVWDLIQEIKGKVFIMLDSENDGIR
THSVKYMESLVLVESARVPASELPKKAEADISLDQIPEDHGLLKRDELEKDGLVGFDLLL
SLLASPSITSVNLMACMGSLTSIAKQRPQFMPRVIQAFETLHVNLPPTLAKSQVSSVRKH
LKMQLLTVLHHPSSFTLHSNISTLLTDLGASDSEIAKHMPKIRESSKRPRPTDDEATTST
SKKSKTTVVKTIQQVMDEDEMGRETPLHPSMLPSIPSTSKAGVQAATKISVVDVLAEELT
PLLQNVENIANLVLISMVTLPENMPPQFQATYTPIAAAGTDSQIGHLARMLSSQIAAAGI
KPRNFNEEDAEAADKENKSKNQKPTGIPVLGGTEEEGRKKPGLPFQAPQGVPKPRARMKQ
FKLNDVTVPLEPVVANQLVSGALSRIIDCEKLCLQGGAPQARIKILVGLVTQFGGDLFPM
LKTHVLEDLRAHSELAFAWLYQEYSNYQGYMPRFLEQEVTMNRYDKLLCAMLMTLLERPD
QRDGLFTRLVMEAPLITERALKVIRKFCEDETHFFTGMHALRELILKRPADIKRYLMELL
DLTFHERTEVRSQATQYVKRLYERQDLKETIESFASKCLQLLLTELPSAALVKRTSENPE
SEEVGTAWAEPSIKLCLYLYLALLPSNHKLIHGLATVYVSTSALIKRTVLRVLEAPVRGM
GMSSPELLLLVENCPKGAETLVTRMLHILTDKAPPSQDLVKRVRDLYLKRVSDVRFLIPV
LIGLEKKEVIAALPKLIKLNPIVVKEVFHRLLMSHQGDNSAGQSPLTPAELLIALHNIDT
AKCDIKSIIKATSLCFNEKAIYTQEVLAVVMQQLMEQTTIPTLLMRTVIQSLGMYPRLSG
FVMNILQRLIVKQVWKFPKVWEGFVKCCERTKPQSFQVLLQLSVEQLKNVFEMSPDMRIP
MLQHVQTFTPHQQKHIPPPIMTVLETDPFAEKKQKEEDEKKKREDEIKAKKEKEAKDKEQ
ARLYQQKLKEERIKQEKLKREEAEKAAKERAEKMRAQKEVAAKAAEKVALEAKAKKEAEE
QKKKEEADKVAQEWKEKQKIWQEAKMKAAREAGQRAAEEAKKKREQRAAAMKAAQEEKEK
KNQLEQEKAKKLEEHRKVELEKKRKEEEAKKLEDKKQEEKKQEEKKQEEKKQEEKKQEEA
LKKAMEERKQKEEQVKKAEEEKKRADELRKQEQERKKQEELKNKEEQELNKKEAEAVKEE
EDLQQESPEGDEPTVEEDEEQASEDEEDDKEEEMDEGQSSDLLGAADSESMDTEDGTQSE
MQAQSGRGRGRGGRGRGRGAKKLQSPAPAPGTRKSTRLKK
NT seq
4443 nt
NT seq
+upstream
nt +downstream
nt
atggatgccgatagcagccggcggtccattgcatcgcaatactttatggatgaggagtct
tcgtcattagccgagggaatcaacgtctcagatcgagtaattgagttgataaatcaggcg
catttgatgacaaaagatgctcagaagatcgctcatctcaaacatgtacaagagctgatt
gtacacaaggatcctactctcttggataatttccttgatgaagttctacagttccagctg
gataaatcagctgatgtcagaaagtttgttattggatttatagaagaagcatgcaagaag
gacaacgatatgttatgcagtgtagttcctcatctgaactcaatgcttggagattcggcg
cagtatgttgcagttataaagaagataatcttgtgcagcatgcaactgtataaggttgct
atgaagtggttggtgaatgccaggacgtttggggaggagatggaggctgtctgggatctc
atccaagaaatcaaagggaaggtcttcatcatgttggattctgagaatgatggaataaga
acccattctgtcaagtacatggagtcactagtgttggtggagtcagccagagtcccagcc
tctgagttaccaaagaaagcagaagcggatatctctttagatcagattccggaggatcat
ggtctactaaagcgtgatgagcttgagaaagatggcttagttggatttgatttactgctt
agtcttcttgcttctccaagtattaccagcgtcaacttgatggcctgtatgggctctctt
acttccattgctaagcaacggccacagttcatgccaagagtgattcaagcattcgagaca
cttcatgtcaatttaccaccaacgctggctaaatcacaagtcagcagtgttaggaaacat
ttaaagatgcaacttttgacagtgctgcatcacccatcttcattcactctacattccaat
atctcaacgttgctgacagacttaggagcatcagactcggagattgcaaaacacatgcca
aagatacgggagagttctaaacgtcctcgacccacagatgatgaagcaactacaagtact
agcaagaaatcaaaaactactgtcgttaagacgatccagcaagtcatggacgaggatgaa
atgggacgagagactccactccatccatccatgctcccttcaataccgagtaccagtaaa
gccggtgtccaggcagccactaagatctccgttgtagatgtactggccgaggagctgacg
ccattactgcagaacgttgagaatattgctaaccttgttctcataagcatggtaacactc
ccagagaacatgccaccccagttccaggctacctacacccccattgcggccgctggaaca
gacagccagattggccacttggcacgcatgctgagcagtcagattgctgctgcgggaatc
aaaccaaggaatttcaacgaggaggatgctgaggctgctgacaaagaaaacaagagcaag
aaccagaagccgactggtatcccagtactaggagggacggaagaggaaggtcggaagaag
ccaggtcttcctttccaagctcctcaaggcgttcctaaacccagggctagaatgaagcaa
ttcaagctgaatgatgtcacagtgcccctggaacccgtagtggccaatcagttggtcagc
ggagcactctcaagaattatagactgtgaaaagctgtgtctgcagggaggtgcaccccag
gctaggatcaagattcttgtgggccttgtcactcagtttggtggtgatctctttccaatg
cttaagacccacgttcttgaggaccttcgagcccactctgagcttgcctttgcttggctg
tatcaagagtactccaactaccagggttacatgccacgcttcctggaacaagaagtcact
atgaatcgatatgacaagcttctatgcgccatgctgatgacgctgctggagagaccggac
cagcgagatgggttgttcactcgcctagtaatggaagctccattaattacagagagagcc
ctgaaagtcattcgaaagttttgtgaagatgagacgcattttttcacgggtatgcacgct
ctgcgtgagctgatactgaagcgacctgcggatatcaagcgatacttgatggagcttctt
gacctgacctttcatgagcgcacagaggtcaggtcacaggccacgcagtacgtcaaaaga
ctgtatgagaggcaggatctcaaggaaaccattgagagctttgccagtaaatgtctgcaa
ctcctactgactgagttaccaagtgcagccctcgttaaacgtacctctgagaaccctgaa
tcagaggaagtaggcactgcctgggctgagccgtccatcaagctatgtctgtatctctat
ctagctctgttgcctagcaatcataaacttatccatgggcttgctacagtgtatgttagc
acctcagctcttatcaagagaacagttcttcgagttcttgaagccccggtacgagggatg
ggtatgtcatccccagagctccttctcctggttgagaattgccccaaaggagcggaaaca
ctcgtcactagaatgcttcatattctcacagataaagccccaccgtctcaggatcttgtg
aagcgagtccgagatctctacctcaagagagtgtctgacgtccgctttctcattccagtc
ctaattggattagaaaagaaagaggtgatagctgccctgcctaagttgatcaaactgaac
cccatcgtagtgaaggaggtattccatcgtctactgatgagccaccagggggataacagt
gccggtcagagcccactgacaccagccgaactactcattgcgctgcacaacattgataca
gccaagtgtgatattaaatccatcattaaagccaccagcttgtgtttcaatgagaaggcc
atctacacccaggaggtcctagctgtggtcatgcagcaactaatggaacagaccaccatt
ccaactctcctgatgcgtacagtcattcaatccctgggtatgtacccgaggttaagtggc
ttcgtcatgaacatcctacaacgactcatcgtcaaacaggtctggaaattccccaaggtg
tgggaaggatttgtcaaatgttgcgagcgcacgaaaccgcagtctttccaggtgcttcta
cagctctctgtggaacagctcaagaatgtatttgagatgagtccagacatgaggatacca
atgttacaacatgtccaaacctttactccacatcagcaaaagcatattccacccccgatc
atgaccgtcttggaaacagatccttttgccgagaaaaagcagaaggaagaggatgaaaag
aagaagcgggaggatgaaataaaagccaagaaggagaaagaggcaaaagacaaggagcag
gcacgactttaccaacagaagctgaaggaagagaggattaagcaggagaaactaaaacgg
gaagaggcggagaaagccgccaaagaaagagcggagaaaatgagagcacagaaggaggtc
gccgcgaaggctgctgagaaagtagctttggaagccaaagcgaagaaagaggctgaagag
cagaagaaaaaggaagaggcggataaagttgcccaggagtggaaagagaagcagaagatc
tggcaggaagcaaaaatgaaggctgctagagaggcaggacagagagctgctgaggaggca
aaaaagaagcgagagcagagagcggcagcgatgaaggctgctcaggaagagaaggagaag
aaaaaccagttggagcaggaaaaggccaagaaactagaagaacatcgtaaggtggagctt
gaaaagaaaaggaaagaggaagaagcgaagaaactggaagacaagaaacaggaagaaaag
aaacaggaagaaaagaaacaggaggaaaagaaacaggaagaaaagaaacaggaagaagct
ttgaagaaagcgatggaagaacggaaacaaaaggaggagcaggtgaagaaggcagaggag
gaaaagaaacgagcagatgagttgaggaaacaagagcaggaaaggaaaaaacaagaagag
ttaaagaacaaagaagagcaagaactaaataaaaaagaggcagaggcagtcaaggaggag
gaggatttgcagcaagaaagtccagaaggggatgaaccgacagttgaagaggacgaagag
caagcttcagaagatgaggaagatgataaagaagaagaaatggatgaaggtcagtcgtct
gatctattaggagcagccgattctgagagcatggatactgaagatggaacacagagtgag
atgcaggcacagagtggaaggggtagagggaggggtgggcgtggacgagggaggggcgcc
aagaaattacagtcccccgcaccagctcctggaactaggaaaagcacaagacttaagaag
taa
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