Asterias amurensis (Northern Pacific seastar): 139945871
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Entry
139945871 CDS
T10870
Name
(RefSeq) general transcription and DNA repair factor IIH helicase subunit XPD-like
KO
K10844
DNA excision repair protein ERCC-2 [EC:
5.6.2.3
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03022
Basal transcription factors
aamu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139945871
09124 Replication and repair
03420 Nucleotide excision repair
139945871
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamu03021
]
139945871
03036 Chromosome and associated proteins [BR:
aamu03036
]
139945871
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139945871
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
139945871
Transcription machinery [BR:
aamu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139945871
Chromosome and associated proteins [BR:
aamu03036
]
Eukaryotic type
Centrosome formation proteins
Spindle formation proteins
139945871
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139945871
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HBB
DEAD_2
Helicase_C_2
DEAD
ResIII
nSTAND3
AAA_11
SNF2-rel_dom
Plasmid_RAQPRD
Motif
Other DBs
NCBI-GeneID:
139945871
NCBI-ProteinID:
XP_071799505
LinkDB
All DBs
Position
1:complement(21007690..21026340)
Genome browser
AA seq
760 aa
AA seq
DB search
MKLNVDGLLVYFPYDYIYPEQYTYMLELKRALDAKGHCVLEMPSGTGKTVSLLSLIVAYL
KNNPSDLNKLIYCSRTVPEIEKVIEELKGLAEYYEKETGEPCNILGLVLSSRKNMCVHPQ
VSKESTGKLVDLKCHELTASFVREKHNYDPTVKVCSLFEEFDSHGKEIPMAAGVYSLDDL
KDAGRESGWCPYFMARHAIYHANIVVYSYHYLLDPKIAEMVSKELSKKSVVVFDEAHNID
NVCIDSLSVHITRRTLEKSQSNLDAIKRQIDRIKETDAARLKQEYQRLVEGLRDASHARE
TDSRLANPVLPDAVLEEAVPGNIRNAEHFIAFLRRFVEYLKSRLRVQHVIAESPPAFLKD
IYGKVCIERKPLRFCAERLHSLLRTLEVTAIQEMSPLTLVANFATLVSTYTKGFSLIIEP
FDDKTPTIPNPVLHFSCMDASIAIKPVFDRFQSVVITSGTLSPLDMYPKILDFRPVTMSS
FTMTLARPCISPMIVAKGNDQVTMSSKFETREDIAVIRNYGNLLVELSKIVPDGMVCFFT
SYSYMENIVASWYEQGIIDNIQKNKLLFIETQDAAETSVALQNYYKACENGRGAVLLSVA
RGKVSEGIDFDHHYGRAVVMFGIPYVYTQSRILKARLEYLRDQFQIRENDFLTFDAMRHA
AQCVGRAMRGKTDYGIMIFADKRFSRIDKRGKLPKWIQEHLKDSVLNLSTDEAIQVSKRF
LRHMAQPFSREDQLGLSLLTLEQLESEEMRKKVEQTAHQV
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgaatgtggatggtttgttggtatacttcccatatgactatatctatccagaa
caatatacctacatgctggaactgaaacgtgcactagatgccaagggtcattgtgtcctt
gagatgccttcaggcactggtaagacggtatctctgttgtcgctcattgttgcttacttg
aagaacaacccatcagatttaaacaagctcatctactgttcaagaacagtaccagaaatt
gaaaaggttattgaagaattaaagggactcgcagagtattacgagaaggaaactggtgaa
ccttgcaacatccttggcttggtacttagctccagaaaaaatatgtgtgtccatccacag
gtgagtaaagagagtacaggcaagctggtcgacctgaagtgtcacgagttaacggcatcg
tttgtacgtgagaaacacaactacgacccaacagtgaaagtgtgttcattatttgaggag
tttgattcccacggcaaagaaatcccaatggccgctggagtctacagtctggatgacctc
aaagacgccggtcgtgaaagtggatggtgcccgtattttatggcaagacacgctatatac
catgccaacatcgttgtctatagttaccactacctcttggatcccaagattgctgagatg
gtctccaaggagctgtccaagaaatctgtggtcgtttttgacgaagctcataacatagat
aatgtctgcatagattctttgagtgtccacatcacaagacggactcttgagaaaagtcag
agtaacctggatgcaattaagagacaaattgacagaattaaggagacagatgcagcaaga
ttgaagcaagaataccagagacttgtagagggactcagagatgcgagccatgcaagagaa
accgattcccgacttgctaacccagtattacccgatgctgttctagaagaggctgtgccg
ggtaacatccgtaatgcagaacattttattgcattccttcggcggtttgtggaatacctg
aagagtcgactaagagtgcaacatgtcatagcggagagtcccccagccttcctgaaagat
atatatggaaaagtgtgcatcgagagaaagccactgaggttttgtgccgagaggttacac
tctctcctacgtaccttagaggtaacggctattcaggaaatgtcacctttgaccttagta
gccaactttgccactctggtcagcacctacacaaaaggtttcagcttaatcattgaacca
tttgatgacaagactccaaccatcccaaatccagttctacattttagttgtatggatgca
tccattgcaatcaagccagtgtttgatcggttccagtctgtcgtcattacttcagggacg
ctgtctccattagatatgtacccaaagattttagactttcgacccgttaccatgtcatcc
ttcacaatgacactcgcacggccctgcatctccccaatgattgtggcaaaaggcaatgac
caagttaccatgtcctccaagtttgaaaccagggaagatattgctgttattcgtaactat
ggcaatttgctagtggagctatccaaaatagtcccagatggtatggtatgcttctttacc
agctacagttacatggagaacattgttgccagttggtacgagcaaggtatcattgacaac
atacagaagaacaaacttctgtttattgagacgcaagatgctgcagagaccagcgttgct
ctacaaaactattacaaggcatgcgagaatggaagaggagctgtccttctgtctgtagct
agagggaaagtctcggagggaattgattttgatcatcactacgggcgagctgtagtcatg
tttggtattccatatgtctacactcagtctcggatccttaaggctcggcttgagtatctc
agagatcagtttcagattcgggagaatgactttctgacgtttgatgccatgaggcatgca
gcgcagtgtgttggccgagcaatgagaggcaagactgactatggtatcatgatatttgct
gataaacgtttttccagaattgacaaaagaggtaaactgccaaagtggatccaggagcat
ctgaaagacagtgtgctaaacttgtccacagatgaagctatacaagtcagcaagagattc
ttgaggcatatggcccagcctttcagcagggaagatcaactgggattgtctctgcttacc
ttggagcagttagaatcggaagagatgcgaaagaaagtggagcagacagctcatcaagtt
tga
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