Asterias amurensis (Northern Pacific seastar): 139946059
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Entry
139946059 CDS
T10870
Name
(RefSeq) nucleoporin NDC1-like
KO
K14315
nucleoporin NDC1
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
139946059
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139946059
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
139946059
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ndc1_Nup
Motif
Other DBs
NCBI-GeneID:
139946059
NCBI-ProteinID:
XP_071799757
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All DBs
Position
13:857189..867382
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AA seq
665 aa
AA seq
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MARIVTSHHWYMRDVFRWRTGASLAWSLILLPFTTILYIVLVKIDVFHPYTWLLDWLGTA
MSFSGFGYIILIAILTTVVAIGNVLCYTVVPTVHINRLSIIWGLVKPPSLLHMACHTLAG
VLMACCWAALIGTSYSNLTVTADKGATLCLNDRHLFLVLHGAFMGFLYSVSYIQQQDQYM
DFPVIQQLKFFQVKTYMWCSLQNNAIRSLRASGYFYILFYLFGSIPKTWLQSNLNLEETP
VPLNSISGLLDVSLLWIVLWTGVVTTHLWGVSLFLFKIFNTEVYQFPIEAAFVGQEERRL
HKALSERHNLLVKYLAYQDLSSLAEHRRDRRADVFALSQPGGHPHNWISICGACLSLIES
LTQRLTSHQEWIANGLAQKKRSQDTTPSEPGGQSSNGSMAEGSRVGGGQSNQDASTFWYT
PREPRGPHLRSSVASPITPGAPMYDHGYNTVLQTPQITSLDVLQDIGTPGIESTRYATPG
SGYGPLARPSIHRDQMKRSSPSGDHRGRTMLPWQHRLDSLRKWRLGAYLLNPLPEAMSQA
LFTDVQLHIWALEALSSLVTASYQEDTYGVVQGKLPEILVCMLAVQNALEKHFKLPTSLP
KRNPSDFRPMRSGPIHPNDRLRFDLRSTVMTSLYRVVAAFGPHLKNIAMAPEYKRKLGHL
MDYKQ
NT seq
1998 nt
NT seq
+upstream
nt +downstream
nt
atggcgagaatagtaacaagtcaccattggtatatgagagatgtgtttcgatggaggact
ggagcaagtctagcctggtccctcatacttcttccttttaccacaatcttgtacatcgtt
cttgttaaaatcgatgtctttcatccatacacatggttacttgattggctcggcacagct
atgtctttctcaggctttggttacatcatcttgattgcaatcctgacaacagttgttgcc
atcggtaacgtcctctgctacacagttgtccctactgtccacatcaatcgcctgtcgatc
atctggggtttggtcaagccaccaagcctcctccacatggcatgccacaccctggctgga
gtcctgatggcctgctgctgggcagcgctgattggcacgtcatacagcaacctgacagtg
accgccgacaagggcgctacgctgtgtctgaatgaccgtcatctgtttctggtgttgcat
ggtgcattcatgggttttctgtattcagtttcttacattcagcagcaggatcaatatatg
gacttcccagttatacaacagttgaaattcttccaagtgaagacgtacatgtggtgcagc
ctgcagaacaatgcaatccgttcattgagagccagtggatatttttacattctcttttat
ctgttcggatctatacccaagacttggttacaatccaacttgaatcttgaagagacccca
gtacctctcaactccatttctggacttctagacgtctccctcttgtggattgtcctgtgg
accggtgtcgtcacaactcacctttggggagtgtcactgtttctgtttaagatcttcaat
acagaggtttaccaattccccatcgaggcggcctttgtcggccaagaagagcgccgtctc
cacaaggcgctgtctgaaagacacaacctcttggttaagtacttggcttatcaggacctg
agctcactggctgagcatcgtcgggatcgaagagcggatgtatttgctcttagccagcct
ggtggtcatccacacaactggatcagtatctgtggagcatgcctgtcactcattgagtct
ctgactcaaagactcacctctcaccaagagtggattgccaacggcctggcccagaagaag
agaagtcaggatactactcctagtgagcctggagggcagtcatccaatgggagcatggca
gaaggatctagggttggtggcggacaatctaaccaagatgcatcaactttttggtacacc
ccaagagagcctcgtggtcctcaccttcgtagctccgtagcatctccgattacccccggg
gcacccatgtatgaccatggatacaacacggtcctacaaacaccacagattactagtctg
gatgtactccaagacattgggaccccagggatagagagcacacgatatgccacccctgga
tctggttacggaccccttgcaagaccatctattcacagagaccaaatgaagcgttcatca
ccctctggagaccatcgcggtcgtactatgttaccatggcagcatagactagacagcctg
agaaagtggcgtctgggtgcctatctattgaaccctctacctgaagccatgagccaggct
ttgtttaccgatgtccagctacatatctgggctcttgaagccttgtcatcgttggtgaca
gcatcttaccaagaggacacctatggtgtggttcaaggcaaactaccagaaatccttgtt
tgtatgctggctgtacagaatgcgctagagaaacatttcaagttacccacgtccctgcct
aagagaaacccaagtgatttcagacccatgagatccggcccaatacatcccaatgacaga
ctacgctttgacctcaggtcaactgtgatgacatcactgtatcgtgttgtggcagccttc
ggccctcatttgaaaaatattgcgatggcacctgagtacaagcgtaaacttggccatctg
atggattacaaacaatga
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