Asterias amurensis (Northern Pacific seastar): 139946134
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Entry
139946134 CDS
T10870
Name
(RefSeq) exosome RNA helicase MTR4-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139946134
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139946134
03041 Spliceosome [BR:
aamu03041
]
139946134
03009 Ribosome biogenesis [BR:
aamu03009
]
139946134
03016 Transfer RNA biogenesis [BR:
aamu03016
]
139946134
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139946134
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
139946134
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139946134
Complex C
U4/U6.U5 tri-SnRNP related factors
139946134
Ribosome biogenesis [BR:
aamu03009
]
Eukaryotic type
Pre-60S particles
Helicases
139946134
Transfer RNA biogenesis [BR:
aamu03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
139946134
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
nSTAND3
AAA_22
Helicase_dom4_arc
Motif
Other DBs
NCBI-GeneID:
139946134
NCBI-ProteinID:
XP_071799851
LinkDB
All DBs
Position
13:complement(1906091..1929079)
Genome browser
AA seq
1030 aa
AA seq
DB search
MAGAFGGDLFSVFDDNADDKKSKKQKGHTQESSDGRESSSVGDQERKRPQSEDHEVPDYS
TGKKPKLALTADELNLAEILPQVRSMTVESPDGCNHEVAIPHDEEYIPLKPTGNKAAKEY
PFILDPFQREALKCLENQQSVLVSAHTSAGKTVVAEYAIAMSLRDKQRVIYTTPIKALSN
QKYRELYEEFQDVGLMTGDVTINPTASCLIMTTEILRSMLYRGSEIMREVAWVVFDEIHY
MRDKNRGVVWEETIILLPDNVHYVFLSATIPNARQFAEWICHLHKQPCHVVYTEYRPVPL
QHYIFPSGGDGLHLVVDEKGEFRQDNFNSAMSVLRDAGDAAKGDAMNKGRKGGTKGPSNI
FKIVKMIMERMFQPVIVFSFSKKECEAYAMQMSKLDFNNTQEEKKLVTEVFNNAIDCLSD
EDKKLPQVENVLPLLKRGIGIHHSGLLPILKETIEILFGEGLIKALFATETFAMGLNMPA
RTVVFTNARKFDGKGFRWLSSGEYIQMSGRAGRRGLDDKGIVILMIDEKMSPGVGKTILQ
GLPDPLNSAFHLTYNMVLNLLRVEGINPEYMLEKSFYQFQNYAVIPELFDKLKRLEDEYN
KMDIPQEESVEAYYKIRQQLNKLGREIQSFITKPKYCLPFLQPGRLVQVKNEDDDFGWGV
VINFRKKANQKMSSPKDDSLVYIAEILLNCSKESVKNSVTDSAKPPKEGEKGEMAVVPVL
LNLITHLSSVRLYLPKDLRPIDNRQSVGKSIQEVQRRFPDSLPLLDPTEDMGIKDESLKR
VVEKVEAFEERMYSHPLHKSPELSRLYGLYEEKAKIASEVKAAKRELKRAKTVIQLEELK
CRKRVIRRLGYATVADVIEMKGRVACEISSGDELLLTELIFNGVFNSLKPEQIVALLSCF
VFEEKSKNTPRLSEQLSGPLRQMQDSARRIAKVSVEAKLQVEEEDYVESFKPQMMDVVFA
WANGSTFAEICKMTDVFEGSIIRCMRRLEELMREMCHAAKAIGNTELENKFAGGIVKIKR
DIVFAASLYL
NT seq
3093 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcgcatttggaggtgatcttttctcagttttcgacgataatgctgacgataaa
aagtcgaaaaagcagaaggggcacacacaagagtcttctgatggacgagaatcaagttcg
gtcggagatcaagaaaggaaacgcccccagtcagaagatcatgaagtacccgactattcc
acagggaagaagcccaagctggctctaacagctgatgaactcaatctggcggagatctta
ccccaagtccgtagtatgactgtggaatcccctgacggatgcaatcatgaggttgccata
ccacacgatgaggaatacatcccgctcaaaccaacaggaaacaaggctgctaaggagtat
ccatttatcctggatccttttcaacgagaagccttaaaatgtctggagaaccaacagtcg
gtcctcgtctcagctcatacatcggcgggaaaaaccgtcgtggcagaatacgctattgcg
atgtctttgcgagataaacagagagtcatctacaccacaccgatcaaagctctgagtaac
cagaagtatcgtgagttgtacgaggagtttcaagatgtcggcttgatgacgggagacgtg
acaataaaccccactgctagctgtctcatcatgacaacagagattctgaggagtatgttg
tatcgaggctcagagatcatgagggaggtggcttgggttgtgtttgatgaaatacactac
atgagagacaaaaacagaggagtggtatgggaagagactattatacttctccccgacaac
gttcactatgttttcctttccgctacaatacccaatgccaggcaatttgctgagtggata
tgtcatcttcataaacagccatgccatgtcgtctacacagagtacagaccggtacccttg
cagcattacatctttccttctggcggtgatggtctccacctagtcgttgatgaaaaggga
gaatttcggcaagataacttcaactcagcgatgtctgtcttgagagacgctggtgatgcg
gccaagggagatgcaatgaacaaaggacggaaaggaggaacaaaaggtccctccaacatc
tttaagatagttaagatgatcatggaacgcatgttccagcccgtcatcgtcttcagcttc
agtaagaaggaatgcgaggcgtacgctatgcagatgtccaagctagacttcaataacaca
caggaagagaagaaactggtcacggaggtcttcaataatgccatcgactgcctgtcggac
gaggacaagaaattaccacaggttgaaaatgttctgcctctgctgaagcgaggtatcggc
atccatcattccggtctcctacccatcttgaaggagactatcgagattctattcggtgag
ggtctgatcaaggcgctgtttgctaccgagacgtttgccatgggactcaacatgccggct
agaacggtcgtctttacaaacgctcgcaagtttgacggcaaaggattcagatggctctcg
tccggtgagtacatccagatgagtgggcgtgccggtaggcgtggcctggacgacaaaggc
attgtcatcttaatgatagatgaaaagatgagtcctggagtaggcaagaccatccttcag
ggtcttccagatccattaaacagtgcattccatctgacctacaacatggtgctgaacctc
ctcagggttgaaggcatcaacccagagtacatgctggagaagtcattctaccaattccag
aactacgccgtcataccagagctttttgacaagttaaaaagactggaggatgagtacaac
aagatggacataccgcaggaggagagcgtggaggcatattacaagatcagacaacagctc
aacaaacttggccgagagattcaatcattcatcaccaaacccaagtattgcttgccgttt
ctacaacctggtagacttgtgcaggtgaagaacgaagatgatgattttgggtggggtgtc
gtcatcaacttccggaagaaggcaaatcagaagatgagtagcccaaaagatgactctctg
gtctacatcgctgagattctcttaaattgctccaaggagagtgtcaagaattccgtgacg
gattcggccaaaccacccaaggaaggagagaagggagaaatggctgttgttcctgttctg
ttgaacttaatcacacatctgagtagtgtcaggttgtacttacccaaagatctccgtccg
atagataacagacagagtgtcggcaaatcgatacaggaggtacagagaagatttccagac
agtcttccgttgctggatccaactgaagacatgggcatcaaggatgaatccttaaagagg
gtcgttgagaaagttgaagccttcgaggagagaatgtacagccatccgttgcataagagt
cctgaactgtctcgtttgtacggcctatatgaagagaaagcaaagattgcttcagaagtg
aaggctgctaagcgagaactgaaacgtgctaagacagttatccagctggaggagttgaag
tgtcgaaagagagttataaggagactggggtatgctacagtggcagatgtcatcgagatg
aaaggacgagttgcttgtgagattagcagcggggacgagttgttactcaccgaactcatc
ttcaacggcgtctttaatagcctgaaaccagagcaaatcgttgcactacttagctgtttt
gtattcgaggagaaatctaagaacacacccaggctatcggagcagctgtcgggtcctctc
agacagatgcaggattctgctcgtaggatcgccaaggtgagtgtcgaggcaaagctacaa
gtagaggaagaggattacgtagagtccttcaaacctcaaatgatggacgtcgtctttgct
tgggcgaacggctcaacgtttgctgagatctgcaagatgaccgacgtgtttgaaggaagt
ataatccgctgcatgaggagactagaggagctgatgagagaaatgtgccacgcagccaaa
gcaataggaaacacggaattggaaaacaagtttgccggaggtattgtgaagatcaagagg
gacattgtatttgctgcaagtctttatctgtaa
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