Asterias amurensis (Northern Pacific seastar): 139947899
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Entry
139947899 CDS
T10870
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4-like
KO
K12662
U4/U6 small nuclear ribonucleoprotein PRP4
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139947899
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139947899
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
139947899
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
EIF3I
Beta-prop_TEP1_2nd
WDR55
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_1st
Beta-prop_WDR75_1st
Beta-prop_DCAF4
Beta-prop_TEP1_C
PRP4
Beta-prop_EIPR1
Beta-prop_EML
ANAPC4_WD40
WDR90_beta-prop_4th
Beta-prop_Vps41
Beta-prop_SCAP
NBCH_WD40
Beta-prop_IFT122_1st
Ge1_WD40
WD_LRWD1
Beta-prop_WDR19_1st
Beta-prop_Nup120_160
WD40_like
Beta-prop_WDR11_1st
Motif
Other DBs
NCBI-GeneID:
139947899
NCBI-ProteinID:
XP_071801847
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Position
15:4340228..4348880
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AA seq
496 aa
AA seq
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MSDDEAPPVFKRQKIHYGTLEDRLREETSKGSFQAGTEAGNISVSAGDTFDLEDHVSEQR
LELLAEFERRKKLRQITVSTDDAVVKAQLRQRGAPICLFGEDKADRRERLRQLLAVAGDD
DFSRHQIEEIAKEKKKEEDQKTWYHEGPDSLMKARLWIAEYSLPRAEKRIQESRLDKNIP
ESKRNAKTQELHRHLRSLTAIGSQIGDTRPISYCQFSPNSQILATASWSGLIKLWSVPDL
KAIRTLRGHNHNIGAVVFHPKATVSLDDQACCMASCAADGSVKLWNLVSDEPVANIEGHA
ARVARLAYHPSGRFLGTTCFDMSWRLWDLEAQDEILHQEGHSRSVYSIGFQCDGSLCATG
GMDSFGRIWDLRTGRCIMFMEGHLKSVLDVSFSPNGYQLATASEDHSVKLWDLRQRKCLY
TIPAHNNIVSGVKFQGDYLISCSYDNTAKVWAHPGWSPLMTLAGHDSKIMSVDISTNEQY
IATASFDRTFKLWASE
NT seq
1491 nt
NT seq
+upstream
nt +downstream
nt
atgtctgacgatgaggctccccccgtctttaagaggcagaaaattcattatggcaccctg
gaggacaggcttagagaggagacttcgaagggatccttccaggccggaactgaagctggc
aacattagcgtctcggctggtgacacctttgaccttgaggatcacgtcagcgaacagcga
ctggagcttcttgctgaatttgaaagaagaaaaaagcttcgtcagatcaccgtttctacc
gatgatgcagtagttaaagctcagctacgacaaagaggggcaccaatatgcttgtttgga
gaggataaggccgacagaagggagaggttgcgtcaattgcttgctgtcgctggagacgat
gatttcagccgacatcaaattgaagaaattgcgaaagagaaaaagaaagaggaggaccaa
aagacctggtaccacgagggaccggatagtctgatgaaagctagactatggattgcggag
tattcattaccaagggcagaaaagaggatacaggaatccagactcgataagaatattcca
gaatccaagaggaatgccaagactcaagagcttcatcgtcatcttaggtccctgacagct
atagggagtcaaatcggcgacacacgacccatctcgtactgccagttcagtccaaattct
caaatcttagcaactgcatcgtggagtggattaatcaagttatggtcagttccagacctg
aaagcaatccgaacactccgaggtcataatcataacatcggggccgttgtgttccaccct
aaagctacggtatccctggatgatcaagcatgctgtatggcatcctgtgcagctgatggt
agcgttaaactctggaatcttgtcagtgatgagccagtcgccaatatagagggtcacgct
gcgagggtagctcgtctcgcctaccatccatccgggagatttctaggaacaacatgtttt
gacatgtcatggcggttgtgggacctcgaagcacaagatgaaattcttcaccaagaaggc
catagcagatcagtatattccattggattccagtgtgatggttcactgtgtgctaccggt
ggtatggattcatttggtcgcatttgggatcttagaacaggacgatgcataatgttcatg
gaaggccatctcaagtctgtcctagatgtcagcttctccccaaatgggtatcaattggca
acagcgagtgaggatcattcggtcaagttgtgggatctgagacaacggaaatgtctttat
accattccagctcataataacatcgtgtcaggggtcaagttccaaggggactacttaatc
agctgctcctatgacaacacagcaaaggtatgggcacatcccggctggtcacctcttatg
acccttgctggtcacgacagcaagatcatgtcagtagatatatcaaccaatgaacagtac
atagcaactgcgtcattcgaccgaacgttcaagctctgggcgtcggaataa
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