Asterias amurensis (Northern Pacific seastar): 139947979
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Entry
139947979 CDS
T10870
Name
(RefSeq) spliceosome RNA helicase DDX39B
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03013
Nucleocytoplasmic transport
aamu03015
mRNA surveillance pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139947979
09122 Translation
03013 Nucleocytoplasmic transport
139947979
03015 mRNA surveillance pathway
139947979
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139947979
03041 Spliceosome [BR:
aamu03041
]
139947979
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139947979
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
139947979
Spliceosome [BR:
aamu03041
]
Complex C
Other components
EJC/TREX
139947979
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
139947979
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
CMS1
Thioredoxin_6
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
139947979
NCBI-ProteinID:
XP_071802016
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All DBs
Position
15:14817822..14829142
Genome browser
AA seq
435 aa
AA seq
DB search
MADNDVDQELLDYEEEEHDTTQEAAGDAPAQQVAKKDVKGTYVSIHSSGFRDFLLKPELL
RAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLSTLQQLEPVEGQIGVL
VMCHTRELAYQIKKEYDRFSKYMPAMKEKVAVFFGGLNIQKDIQKLKTDPPHIVVGTPGR
LLALCRNKSLNLKNVKHFILDECDKMLEQLDMRKDVQEIFRTTPHEKQVMMFSATLSKEI
RPVCKKFMQDPMEVYVDDETKLTLHGLMQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFIR
SVQRCVALCELLVEQNFPAISIHRLMPQATRLQNYKLFKNFEKRILVATNLFGRGMDIER
VNIVFNYDMPENSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNITELP
EEIDMASYIEPDRFQ
NT seq
1308 nt
NT seq
+upstream
nt +downstream
nt
atggctgataatgatgtcgatcaagagcttttggattacgaagaagaggaacacgacacc
acccaggaggctgctggtgatgcccccgcgcaacaagtagccaagaaagatgtgaaagga
acctacgtgtccatacacagctctggattcagagatttcttgttgaagccagagttgctg
cgggcaattgttgactgtggttttgaacatccatctgaagttcaacatgagtgcattcca
caagctatccttggtatggatgtcctttgccaggccaagagtggtatgggaaagacggca
gtctttgttttgtcaactcttcaacagctagagccagtagaaggacagatcggtgtgttg
gttatgtgccacactcgtgagctggcctaccagatcaagaaggagtacgaccgcttctcc
aagtacatgccggccatgaaggagaaggtagccgtgttctttggcggtctcaacatccag
aaggacatacagaagctgaagacggatccccctcacatcgtagtcggcacaccaggacgt
ctgttggcgctctgccgtaacaagtcgctcaatctcaagaatgtcaagcacttcatcctt
gatgaatgcgacaagatgctggaacagctagacatgagaaaagacgtccaagagatcttt
cgcaccaccccccatgagaaacaagtcatgatgttcagcgccacactcagcaaggaaatc
cggccagtctgcaagaagttcatgcaagacccaatggaagtgtacgtcgatgacgagact
aagctaactctccacggtctgatgcaatactacgtcaaactgaaggacaacgagaagaac
cgtaagctgtttgatctcctcgatgtgctagagttcaaccaggttgtcatcttcatcaga
agtgttcaacgctgtgttgctctgtgtgaactcctggtggagcagaacttccctgccatc
agtatccatcgcttgatgccacaagccacaagattgcaaaactacaagttgttcaaaaac
tttgagaagcgcatcttggtcgctaccaacctgttcggacgcggtatggacatagagaga
gtgaacatagtgttcaactacgacatgcctgaaaactccgacacctaccttcacagggtt
gcccgtgctggtcgctttggcaccaagggtttagccatcacctttgtctccgatgagaat
gatgctaaaattctcaacgatgttcaggacagatttgaagtcaacatcactgaattgccc
gaagaaatcgacatggcctcttacattgaacctgacaggttccagtga
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