Asterias amurensis (Northern Pacific seastar): 139948057
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Entry
139948057 CDS
T10870
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16-like
KO
K12813
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX16 [EC:
5.6.2.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139948057
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139948057
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139948057
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
139948057
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
WHD_HA2
Helicase_C
HA2_C
DEAD
AAA_19
AAA_22
AAA_30
nSTAND3
Cas3-like_C_2
Flavi_DEAD
T2SSE
nSTAND_NTPase5
PhoH
Motif
Other DBs
NCBI-GeneID:
139948057
NCBI-ProteinID:
XP_071802163
LinkDB
All DBs
Position
15:complement(873580..964156)
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AA seq
1049 aa
AA seq
DB search
MASKEVNLWVRDSLHDILGISDHYIADYLIGLAGKASSGGDFIRRIKDTGTIDVNKSITT
FAQELFEKLPRKTSSRVLNRAKEQAAIATTKHNQSYALVSDDDQDITVTPTSPIKRRDKR
EKGNKRKHLRKKKEESSESESDPEPERSSKNAKRDEDSDSESDEWDREEKKRLQDLEERD
AFAERLRNKDKEKTKSVTDKGNKKAYEEAKKRLEMAEQDRRKMVPDLRKESRRKYVKKRE
EDKLEEIEADIIDEEYLFSSTDLTKKEKQELEYKKRVLKLAKDHKKAGDKQKEGRYYMPK
DDEKPSDKYVEPLFDEMELAPRSEQQRWEEEHVKLGSLKFGAKDAKQKHKAKQYDLVVDE
LGEIEFVSAMQMPGTGDRSQSEPEVRELSAAQRKKQSIAETRKLLPIFKFREDLLQAIED
HQILIIEGETGSGKTTQIPQYLFEAGYTKDGKKIGCTQPRRVAAMSVAARVAEEMSFKLG
NEVGYSIRFEDCTSDRTILKYMTDGMLLREFLGEPDMAGYSVIIIDEAHERTLHTDILFG
LVKDISRFRPDLKLLISSATLDTDKFAEFFDDAPIFRIPGRRFPVDIFYTKAPEADYLDA
CVISVLQIHVSQPEGDVLVFLTGQEEIETCMEILQERVRKLGTKIRELIVLPIYSTLPSE
LQAKIFEPTPPGARKVVLATNIAETSLTIDGIVFVIDPGFNKQKSYNARTGMESLVVTPV
SKASANQRAGRAGRVAAGKCFRLYTAWAYKNELEENTIPEIQRTNLGNVVLLLKSLGIND
LIHFDFMDPPPHETLVLALEQLYALGALNHKGELTKLGRRMAEFPVDPMMSKMILASEKY
QCTEEILSITAMLSVGNAIFYRPKDKIVHADNARVNFFTPGGDHLTLLKVYNEWLETDFS
TQWCFENFIQHRSMRRARDVRDQIKGLMERVEIPSTSSMHDNVAIRKAITAGFFYHTAKF
SKGGQYKTVKHQQTVLVHPNSSLFEEQPRWLIYHELVFTTKEFMRQVIEIENAWLLEVAP
HYYKAKELEDASSRKMPKNTGKSKEETRT
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atggccagtaaggaagttaacctctgggtccgagacagccttcatgacatcctaggcatc
agtgatcactacatagctgattacctcatcggacttgctggaaaggcaagcagtggaggg
gacttcatccggaggattaaagacacaggaacgatcgatgtcaataaatccatcacaaca
tttgctcaggagctgtttgagaagctgccgaggaagacatcaagtagggtgttgaacaga
gccaaagagcaggctgccatagcgactactaaacacaatcagagttatgctctggtatct
gacgatgatcaggatattactgtcactccaacatctcctattaagagaagggacaagcgt
gagaagggaaacaagaggaaacatcttaggaagaagaaagaggagagcagtgaaagcgag
agtgatcctgagcctgaaagatccagcaagaatgccaagcgagacgaggactcggactct
gagtccgatgaatgggaccgagaggagaagaagagattgcaggatctggaggagagggat
gccttcgctgaacgacttagaaacaaggacaaagaaaaaaccaagagtgtgacggacaaa
ggaaataaaaaggcttatgaggaggcaaagaagaggcttgaaatggccgagcaggaccgg
agaaagatggttccagatctgaggaaagaatcaagacgaaaatacgtcaagaagcgagag
gaagacaagctggaggagattgaggcagatataattgatgaagaatatcttttctcgtca
acggacttaaccaaaaaggaaaagcaagagttagaatacaagaagcgtgtattgaagctt
gccaaagatcataagaaggctggagacaagcagaaagaaggtcgttactacatgcctaaa
gatgatgagaaaccatcagacaagtatgtggagccactctttgatgagatggagttggca
ccgaggtctgagcagcagagatgggaggaagaacacgtcaaactaggatccttgaagttt
ggggctaaagatgccaaacagaaacacaaggccaagcaatatgatttagttgtggatgag
ttgggagagattgaatttgtcagcgcaatgcagatgcctggaactggtgataggtcccag
tccgaaccagaggtgcgtgagttatcagccgctcagaggaagaaacagagtatcgcagaa
actcgcaagcttcttcccatcttcaaatttcgggaggatcttcttcaggccatcgaggat
catcagatattaatcattgaaggggagactggatccgggaagacaacacagataccacag
tacctgtttgaagcgggctacactaaagatggaaagaagattggatgcacccaaccaaga
cgtgttgccgcaatgagcgtggccgctagggtggctgaagagatgagtttcaagcttgga
aatgaggttggttatagtatccgatttgaggactgcacatcggatagaaccatcttgaag
tacatgacggatggaatgctccttagagagtttcttggtgaacctgacatggctggctac
agtgtcattatcatcgatgaagcccacgagcgtaccttacacacagacatcctctttggt
ctcgtcaaggacatctcacgcttcagaccggatctcaagttgctcatatcaagcgccact
ctggacactgacaaatttgccgagttcttcgacgacgctcctatattccgtatccctggg
cgtcgttttccagtagatatcttctataccaaggcaccagaggcagactacttggatgct
tgtgtgatctcagttctacagatccacgtctctcagccagaaggagacgtccttgtgttc
ctcactggtcaggaagagattgagacatgcatggagatcttacaggagagagtcaggaaa
ctaggcaccaagatccgagagctaatcgtcctcccgatttactccaccctcccctctgag
ctccaagccaagatctttgagcccactccgccaggggctcgtaaagtggtcttagccact
aacatagcggagacatccttgactatagacggcatcgtcttcgtcattgatccagggttc
aacaagcagaagagttataatgcaaggactgggatggagtcccttgtcgtgaccccagtg
tcaaaggcatcagctaatcagcgagctggcagggcaggcagggtggctgccggtaaatgt
ttccgtctctacactgcctgggcttacaagaatgaactggaggagaacaccattcctgaa
atccagagaacgaacctcggcaacgttgtcctcctcttgaagagcctgggcatcaacgat
ttgattcactttgactttatggatccacctccccatgagacactggtccttgccctggag
cagctatatgccctgggggcactcaaccacaaaggagagctcactaaactgggtcgcagg
atggcggagtttcccgtggatccaatgatgtctaagatgatcttagcttctgaaaaatac
cagtgtactgaggagattcttagtataacagccatgttgtcagtcggcaatgccatcttc
tatcgacccaaagataagatcgttcacgccgacaacgctagagtcaacttcttcactcct
gggggagaccatctgacacttctcaaagtctacaatgaatggctggagacagacttttct
acccagtggtgttttgagaacttcatccagcatcgatcgatgcgaagagcaagagatgtc
cgagatcagatcaaaggactgatggagagagttgagattccttctacttcatcaatgcat
gataacgtcgctatcagaaaggctatcacagcgggcttcttttaccacacggctaagttc
agtaaaggcggtcagtacaagacggtgaagcatcagcagacagtactggtacatcccaac
agtagtctgtttgaagagcagcctcgttggctcatctatcatgaactggtcttcactacc
aaggaattcatgcgacaggtgattgagattgagaatgcctggctccttgaagtagctcct
cattactataaagccaaggagctggaggacgcatcaagtcgtaagatgcccaagaatact
ggcaagagcaaagaggagacgagaacgtga
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