Asterias amurensis (Northern Pacific seastar): 139948127
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Entry
139948127 CDS
T10870
Name
(RefSeq) LOW QUALITY PROTEIN: superkiller complex protein 2-like
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139948127
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139948127
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139948127
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
139948127
mRNA degradation factors
3'-5' decay
Ski complex
139948127
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
MTR4_beta-barrel
DEAD
DEXQc_Suv3
Helicase_C
MTR4-like_stalk
ResIII
TPR1-like_2nd
Motif
Other DBs
NCBI-GeneID:
139948127
NCBI-ProteinID:
XP_071802266
LinkDB
All DBs
Position
15:13207110..13232170
Genome browser
AA seq
1280 aa
AA seq
DB search
MADAEWAELEKYRLDLTPKDASDGLDFSLLELGSTGQVTAVPSWDHIPSSRLAPLSTLPN
GLPPVLDDLQTKTLQFLNRPEKLPIHEVTKAQRFWPRTADPHSLFEVSSCPLQTTLQVER
NQTTGQLMGFKEVRTAVTASTAKNSLSLNRQPGPPTQSVRGSSTNFPFWPGGMDEPSEET
IYARGEGEEEIDFENDLLSTPPGLDQGMAFDLKPAADCNPVQPPSSENTSLRTVPHILKL
TDLMTIDDDDDYDDDDDGDLELDGDEEKKNEVEVESTARGEGDTEAVESLDKMLPKEMVV
AKHSRQAEADSSKEQWAVNVDTSSPVDDFHKRVPAPAKEWPFELDVFQKQAIIHMEDHDC
VFVAAHTSAGKTVVAEYAIALSLKHLTKTVYTSPIKALSNQKFRDFRETFGDVGLLTGDV
QIKTDASCLIMTTEILRSMLYNGSDVIRDLEWVVFDEVHYINDSERGVVWEEVLIMLPAH
VKIILLSATVPNTMQFADWVGRIKRRKIYVISTLKRPVPLEHYLYTGNSNKTNKELFLIV
DSTKKFLTSGYHKAVDAKKERESKSSASFGAKGARHGAPKGDKGVYLSIIEMLRKREQLP
LVAFTLSKKRCDENASALTTLDLTTTNEKSEIHVFVQKCVERLKGXDRMLPQVLHMRDLL
KRGIGVHHSGVLPILKEVIELLFQRGLVKLLFATETFAMGVNMPTRTVVFDSIRKFDGSG
MRNLLAGEYIQMAGRAGRRGLDTTGMVIILCKGDVPETSELFKMMLGKPTQLESRFRLTY
TMILNLLCVEELRVEDMMRRSFSESETRKDTKVYEEKLRHVQEEMVHVKELSCYLCNEDL
EQYYETCRQLQGLRMQLQKLIASHPLGVKSLSGGRVVIVRTKKHQNALGVVLSSSTASKE
RTFKVLVLCNQENSPEAAKSAETPPDTSRALVEPLRKEVLFEPEGPCGHTVVDLLGEDIG
VITTVTIKIMCDRIVDDYKKRQIPRFRDNPPSQSTSVATQELLRITEANPQGLEALDPIK
DLHLRDLDMVEKFRERDSLESLLDKYSCLNCPTFLEHFDVMSHRMKLKEDFNHLRFLLSD
QSLHLLPEYYQRIQVLQQLRFLDASNTIQLKGRVAREISNHELIITELVFQSILTGLPPE
EIAALLSCMVFQERRCSEPELTPSLKQGVDKIKAEAKRLAEIQHECGMNLSITDFVDQFR
FGLTQVVYEWARGMPFSEITNLTDVSEGIIVRTIQRLDEVCRDVRSAARIVGDPSLFQKM
DDASQLIKRDIVFAASLYTQ
NT seq
3843 nt
NT seq
+upstream
nt +downstream
nt
atggcagacgccgagtgggccgagttagagaaatatcgtcttgacttgactccaaaggat
gcatctgatgggcttgatttctcgttacttgagcttggatcaacaggtcaggtgacagcg
gtcccaagttgggaccacattccatcatcacggttagcaccactcagtacgttaccgaat
ggattaccaccagtcttggatgaccttcaaacgaagacactgcaattcctgaatcgacct
gaaaaactgccgatccatgaagtaacaaaagctcagaggttttggcctcgcacagcagac
cctcacagcctgtttgaagtgtcatcatgtccattacaaacaacgctacaggtggaacgg
aaccagactacagggcaactcatgggattcaaagaggtcaggacagctgtcacagcctcc
acagccaagaactctctgtccctcaatcggcagccagggcctcccacccagtcggtacgt
ggtagctccacaaacttccccttctggccaggtgggatggatgagccgtcggaagagacc
atttatgccagaggggagggcgaagaagagatcgactttgagaatgatctcctgagcacc
ccaccaggcttagatcagggaatggcattcgacttaaaaccagcggcagactgcaatcct
gtccaaccaccctccagtgaaaatacatcactaaggacggtgccacatatactcaaacta
actgatctgatgacgatagatgatgatgatgattatgatgatgatgatgatggtgatctt
gagttggacggagatgaagagaagaagaatgaagttgaagtagaatcaaccgcaagaggc
gagggtgacacggaagctgtggaaagtttggacaagatgctgccaaaggagatggttgtt
gccaagcactccaggcaagctgaggcagactcgtctaaggaacaatgggcagtcaacgta
gacacctcatcgccagtagatgacttccataaacgggttccagcaccagccaaagagtgg
ccatttgagttggatgtattccagaagcaagctataatccacatggaggatcatgactgt
gtctttgtagcggctcacacctcggccgggaagacggtagtcgctgaatatgccatcgct
ctgtcactcaagcatctcacaaaaaccgtatacacatcaccaatcaaggcgttgtccaat
cagaagttccgtgacttccgggagacgttcggtgacgttggtcttttaacgggagacgtc
cagatcaagacagatgcctcatgtctcatcatgaccacagagattctgaggtcgatgctt
tataatggatctgatgttatacgtgacttggagtgggtcgtctttgatgaagttcactat
atcaatgactctgagagaggagtggtttgggaggaagttctgatcatgctacctgctcat
gtcaagatcattcttctaagcgccactgtgcctaacactatgcagtttgctgactgggtt
gggcgcatcaaaagaagaaagatctacgtgatcagtacgttgaagcgaccagtgccactg
gaacattatctgtacacaggaaacagcaacaagaccaacaaagagctctttctcatcgtt
gactccacaaagaaatttctcacatcgggttaccacaaagcagtagatgccaagaaagaa
cgagagagtaaatcctctgcgtcttttggcgccaaaggagcacggcatggagcacccaaa
ggtgacaagggagtttatttatccatcattgaaatgctgcgtaaaagagaacagcttcca
cttgtggcatttaccctctccaagaaacgctgcgatgagaacgcatcggccctcacaacc
cttgatctcacgacgaccaatgagaagagcgagattcacgtttttgtgcagaaatgcgtg
gagcgtctgaaaggangcgatcgtatgctaccgcaggtgcttcacatgcgtgatttattg
aaacgaggcattggtgtacatcacagtggagttcttccaatcctgaaggaagtcattgaa
ttactgttccagcgaggtctagtcaagctattgtttgcaactgaaacctttgccatggga
gtcaacatgcctaccaggacggtcgtctttgattccatccgtaagtttgacggttcaggg
atgcgtaacttactggcaggcgagtacatccagatggcgggcagggctggtcgacgtggg
ctagacacaacagggatggtcatcatactatgcaaaggggatgttccggagacgtcagaa
ctgtttaagatgatgctgggtaaacccactcagctcgaatcccgattccgtctgacctac
actatgattcttaacctcctgtgcgtggaagaactccgagtcgaagacatgatgcgacga
agcttctccgagtctgagacgaggaaggacacgaaggtctacgaggagaagctgcgacat
gtccaggaggagatggttcacgtcaaggagttgagttgctacttgtgtaatgaggacctg
gagcaatattacgagacttgtagacagcttcagggcctcaggatgcagctccagaaactg
atcgcgtcacatcctctaggagtgaaatccctctctggaggtcgagtggtcatcgtgcgc
accaagaagcatcaaaacgccctcggtgtcgtccttagttcatccacggccagcaaagag
cggactttcaaagtattggtcctttgcaatcaagaaaactcaccagaggctgccaagtcg
gcggagacacctccggatacctctagagctctggtagagcccctcaggaaggaggttctg
ttcgagccggagggtccttgcggccacacggtggtggatctactcggagaagacatcggt
gttattacgacggttacgattaagattatgtgcgaccgcatcgttgacgattacaagaag
agacagattccgagattcagagacaatccgccgagccagtccaccagtgtagccacccag
gagctgctcaggattactgaggcgaacccccagggtctggaagctctagaccccatcaag
gacctccatctgagagacctggacatggtggagaagtttcgggagagagattccttagag
agcctcctggacaagtatagctgcctcaactgcccgaccttcctggaacatttcgatgtg
atgagtcatcgtatgaagctgaaggaagatttcaaccatctcaggttcctcttatcagat
cagagtcttcatctactcccagagtactaccaaagaattcaggtcttgcagcagctgcgt
ttcctcgacgcctccaacaccatccagctgaagggtagagtagcccgtgagatcagtaac
catgaactgatcatcactgagctagtgtttcagagcatccttacagggctgcctccagag
gagatcgccgccttgctgtcctgtatggtgttccaggagaggcgttgcagcgaacctgaa
ctcacaccatctcttaaacagggagtggacaagataaaggcagaagccaaacgacttgca
gagatccagcatgaatgcggcatgaacttatcaataacagactttgtggatcagttcagg
tttggcctcacacaagtggtgtatgagtgggcaagaggaatgcccttttctgaaatcacc
aatctgacggacgtctctgaggggattatcgttcgaaccatccagcgattagatgaagtt
tgtcgggatgtgcgcagcgctgcgcgcatcgttggtgatcccagcctgtttcagaagatg
gacgacgcctcgcaactcatcaagagagatattgtctttgctgcaagtttatacacgcaa
tag
DBGET
integrated database retrieval system
