Asterias amurensis (Northern Pacific seastar): 139948520
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Entry
139948520 CDS
T10870
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139948520
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139948520
03041 Spliceosome [BR:
aamu03041
]
139948520
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139948520
Spliceosome [BR:
aamu03041
]
Complex B
Other components
Prp19-related factors
139948520
Complex C
139948520
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
TPR_14
Suf
TPR_2
TPR_8
TPR_12
TPR_15
ARM_TT21
Mad3_BUB1_I
RPN7
ARM_TT21_C
TPR_1
TPS
DHR-2_Lobe_A
TFIIA
Motif
Other DBs
NCBI-GeneID:
139948520
NCBI-ProteinID:
XP_071802796
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Position
15:1699231..1712561
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AA seq
850 aa
AA seq
DB search
MPISEQQSEVIFEEDDLPYEEEILRNPYAVKCWLRYVEHKGTGAPGPLNLIYERSLKELP
GSYKLWYNYLKVRRKHVKGRCIIDPGYEDVNNAFERALVFMHKMPRIWLDYCQFLMDQRK
ISRVRRTFDRALRALPISQHHRIWPLYLKFVRMYPLHETAVRVYRRYLKLFPENAEKYIE
YLVSIDRLDEAAVRMADIVNNANFVSKVGKSNHQLWHDLCNLICKNPTKVTSLKVDPIIR
GGIKRFTDERGKLWCSLADYYIRSGHFEKARDIYEEAIQTVTTVRDFTQVFDAYAQFEES
MISAKMETTSELGHAEEDDTDLELRLERYEDLMDRRPLLLNSVLLRQNPHNVHEWHKRVN
LFEGKPKEIINTYTEAVQTVDANQATGKLYTLWVEFAKYYEKHGQIPEARLIFEKGTKVS
YVKVDDLGAVWCEWAEMELRHENFSEALVLLRRATATPKNKASYYDKSEPVQNRLYKNLK
VWSMYADLEESFGTFKSTKAVYDRMVDLRIATPQIIINYGMFLEEHKYYEEAFKAYEKGI
GLFKWPNVFDMWNTYLTKFIERYGGKKLERARDLFEQCLDGCPKKFAKGIFLLYAKMEEN
YGLARHAMAVYERATEGVLPEEQNEMFNIYIKRAAEVYGVTHTRSIYEKAIEVLPEEQSR
SMCLRFADLERKLGEIDRARAVYAHCSQMCDPRTTAAFWQTWKEFEIKHGNEDTVREMLR
IKRSVQATFNTQVNFMSAQMLAASKTPSGTVSDLGSGGLDDMKLLEQRAQVMAAEAEADK
PKSKKDILFVRGNAKASDADLAEAARTTNPEEINIDIDDDDDESGDDVDEVQVETQAVPT
EVYGNIQQQE
NT seq
2553 nt
NT seq
+upstream
nt +downstream
nt
atgcctatttcggaacagcaatcagaagtcattttcgaggaggatgaccttccatatgag
gaagagatcttgcgtaatccgtatgccgtcaagtgctggcttcgttacgtcgagcacaaa
ggcactggagctcccgggcctctcaaccttatctatgagaggtcactgaaagagttgcct
ggaagttacaaactttggtacaactacctgaaggtcagacggaagcatgtcaaaggtcgc
tgcatcattgaccctggctatgaagacgtcaacaatgcctttgagagagctttggtgttc
atgcacaagatgcctcgtatatggctggactactgccagttcctcatggaccagcgcaaa
atctcccgcgtacgacggacatttgacagggcattgagggcgctacccatcagccagcac
catcgcatctggccactgtacctcaaatttgtccggatgtaccccctccatgaaacggct
gttcgggtttacagaagatacctaaagctatttcctgagaatgctgagaagtatatcgag
tacttggtgtccatcgacagattggacgaagcagcggtcagaatggctgacattgtcaac
aacgctaactttgtgtcaaaggttggcaagtcaaaccatcagttgtggcacgatctctgc
aatctcatctgcaagaatcccaccaaggtgacgtctctgaaggtcgatcccattatccga
ggtggcatcaaacgattcacagatgagcgaggaaaactctggtgctccctggccgactac
tatatcaggagcggccattttgaaaaggcccgagatatttatgaggaggcgatacagaca
gtcacaactgtcagagatttcactcaggtatttgatgcatatgcccagtttgaggagagc
atgatcagcgcaaagatggaaaccacgtctgagttgggacatgctgaggaagatgataca
gaccttgagctacgcttagagcgctacgaagacctgatggaccggcgccctctactgttg
aacagtgtcctgcttcgacaaaacccgcacaacgtccacgaatggcacaaacgggtcaat
ctgtttgaagggaaaccgaaggagattattaatacatacaccgaggcagtacagaccgtg
gatgcaaaccaggcaaccggtaaactgtacacgttatgggtggagtttgcaaagtactat
gagaagcatggacagatacctgaggcgcggctgatttttgagaagggtacaaaggtcagt
tatgtcaaagtggatgacctcggagcagtgtggtgtgaatgggcagagatggagctcagg
catgagaatttcagtgaagctttagtactactgaggagagcaacagcaacgccaaagaac
aaagcatcctactatgacaagagtgagcctgtacagaaccgactctacaagaacctgaaa
gtgtggtccatgtatgctgatcttgaagaaagttttggaaccttcaagagcacaaaagca
gtgtacgaccgaatggttgatctgagaatcgccacaccccagatcatcatcaactatggt
atgttcctggaagagcataagtactatgaggaagcctttaaggcatacgagaagggcatt
gggctgttcaagtggccaaacgtttttgacatgtggaacacatacttgaccaaattcatc
gagcgatacggtggcaaaaagttggaaagagccagagatctgtttgagcagtgcttggat
ggttgccccaagaaattcgctaagggaatttttctgctttacgccaagatggaggagaac
tatggtctggccagacacgctatggctgtttacgagcgggcaacagagggcgtgcttcct
gaagaacaaaatgagatgttcaacatctacatcaagagagctgccgaggtgtatggggtg
acacacacccgctccatctatgagaaggccatcgaggtcctacctgaggaacagtctagg
agtatgtgtctacgttttgctgatctagaacgaaagcttggggagattgaccgagccagg
gctgtctacgctcactgctcacagatgtgtgacccaaggacaactgcagctttctggcaa
acgtggaaagagtttgagattaaacatggaaatgaagacactgtacgagagatgctaaga
atcaaacgtagtgtccaggcaaccttcaacacacaggtgaacttcatgtcggctcagatg
ttagctgcatccaaaaccccatctggtacagtttctgatcttggatctggtggcttggat
gatatgaagttattggagcaacgagctcaagttatggccgccgaggccgaggctgataaa
cccaaatcaaagaaagatattctgtttgtcagggggaacgccaaagccagcgatgctgat
ctggctgaagcagcacggacaaccaaccccgaggagatcaatatcgacatcgacgatgat
gatgatgaaagtggggacgatgtagatgaagtacaagtagagacccaagccgtcccaacc
gaggtctatggaaacattcagcaacaagagtga
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