Asterias amurensis (Northern Pacific seastar): 139948648
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Entry
139948648 CDS
T10870
Name
(RefSeq) general transcription and DNA repair factor IIH helicase/translocase subunit XPB-like
KO
K10843
DNA excision repair protein ERCC-3 [EC:
5.6.2.4
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03022
Basal transcription factors
aamu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139948648
09124 Replication and repair
03420 Nucleotide excision repair
139948648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamu03021
]
139948648
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139948648
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
139948648
Transcription machinery [BR:
aamu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139948648
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139948648
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ERCC3_RAD25_C
Helicase_C_3
ResIII
Helicase_C
DEAD
SNF2-rel_dom
AAA_34
Motif
Other DBs
NCBI-GeneID:
139948648
NCBI-ProteinID:
XP_071802961
LinkDB
All DBs
Position
16:complement(10741153..10755976)
Genome browser
AA seq
792 aa
AA seq
DB search
MGKRDRKNGDGQKSKSKKAKFTEVDQDEDSQGADGVTELPGSASRVVEDKTEEDEYGAKD
YRKNLQLKLDHKSRPLWLAPDGHIFLESFSPVYKHAHDFLIAISEPVCRPEHIHEYKLTA
YSLYAAVSVGLQTNDIIEYLRRLSKTSIPDGIIEYIKLCTLSYGKLKLVLKHNRYFVEST
QPDVLQKLLKDPVVQQCRRREDLDDEGQEKSEGFLVSKLSGQSALKLNQPNSNSSSTAGP
SSGPDGGDQNGDKAEIPSDIFNFYEKIDREDEEGEELQTVSFEVQQEEIETLQRRCIELD
YPLLAEYDFRNDTHNPDLSIDLKPTTVLRPYQEKSLRKMFGNGRARSGVIVLPCGAGKTL
VGVTAACTVRKRCLVLCTSGVAVEQWRSQFKMWSTVDDSMVCRFTSDAKDKPMGCNICIS
TYSMVAHSTKRSWEAEQVMKWLRDQEWGLMLLDEVHTIPAKQFRRVLTVVQAHCKLGLTA
TLVREDDKIADLNFLIGPKLYEANWMELQRMNFIARVQCAEVWCPMTPEFYREYLGLRSR
KRLLLYVMNPNKFRACQFLVRFHEQRNDKVIVFSDNVFALKHYAIAMDKPYIYGPTSQGE
RLQILQNFQHNPLVNTIFISKVGDNSFDLPEANVLIQISSHGGSRRQEAQRLGRILRAKK
GAAAEEYNAFFYTLVSQDTQEVYYSLKRQRFLVNQGYSFKVITKLAGMDESNLKYGKKQE
QQQLLQQVLLASDIDAEEEKIPGDSAKGSSQYVRRVGNMSSMSGADDQVYIEYQSSKSKK
NLSHHPLFKKFR
NT seq
2379 nt
NT seq
+upstream
nt +downstream
nt
atggggaaaagagacagaaaaaatggagacggacagaagagtaaaagcaagaaggctaaa
ttcacagaggttgatcaggatgaagactctcaaggagctgatggtgtgaccgaattacct
gggagtgcatctagagtagtggaggacaaaacagaagaagacgagtacggcgctaaggac
taccgaaaaaacctgcagcttaaactagaccacaaatcaagaccgttatggctagctcca
gacggacacatcttcttggaatcgttctcccctgtctacaaacacgcccacgacttcctg
atcgcgatctcagagccggtgtgtcgacccgagcacatccatgagtacaagctgactgcc
tactcgctctacgctgccgtctctgtcggtttgcagaccaatgacatcatcgagtatctc
cgccggctcagcaagacctccataccggacggtatcattgaatatatcaagttgtgtaca
ctcagctatggaaagttaaagttggttctcaaacacaaccgctactttgtggaaagcaca
caaccagatgttctacagaagttgttaaaagacccggttgtacagcagtgtcgtcggaga
gaggatcttgatgatgagggacaggagaagagcgaaggctttctggtgtccaagttatcc
ggacagtcagctttgaagctcaatcaacctaactccaactccagtagtacggcgggcccg
tcgtccggcccagacggcggtgaccagaacggggacaaagcggagatcccgtcagatatt
ttcaacttttacgagaagatcgaccgggaggatgaggagggggaggagcttcagactgtg
tccttcgaggtccagcaagaagagatcgagaccttacaacgacggtgtatcgagttggat
tatccacttctagctgaatatgacttccggaatgacactcacaatcccgacttaagtatt
gacttgaaaccgaccacagttttacgaccataccaggaaaagagcctccgtaagatgttc
ggaaatggacgggcaaggtcaggggtcatcgtgctcccgtgtggtgccggtaagacgtta
gtcggggtgactgcagcctgtacagtgcgtaagcgttgcttggtactctgtacgtctggg
gtcgctgtggagcagtggaggtcacagttcaagatgtggtcaacagtggatgactccatg
gtgtgtcgcttcacatcagatgctaaggacaaaccaatggggtgtaatatctgcatcagc
acgtactccatggtggcacattcaaccaagagatcgtgggaggctgagcaggtcatgaaa
tggttacgtgatcaggagtggggtctcatgctgttggatgaggtgcacacaatccccgcc
aaacagttccgccgcgttctgacggtggttcaggctcactgcaagctcggcctgaccgca
accctggtgcgggaagacgacaaaattgcggatctgaacttcctgatcgggcccaagctc
tacgaggccaactggatggagttgcagaggatgaacttcatcgccagggtgcagtgcgcc
gaggtctggtgcccgatgacacctgagttctaccgagagtatttgggccttcgatcaagg
aaaaggctgctgttgtatgtgatgaatccaaacaagttccgtgcctgccagttcctggtg
cgtttccacgagcaacgaaacgacaaagtcattgttttctcagacaatgtgttcgctctc
aagcattacgctattgctatggataaaccatacatctatggacccaccagccaaggagag
aggctgcagattctacaaaactttcaacacaatcctctcgtcaacaccatcttcatctca
aaggttggtgataactcctttgacttgccagaagccaatgtcttgatccagatctcctct
catggaggctcaaggaggcaagaggcccagagattgggacgaatcctcagagccaagaaa
ggagcggcagccgaagagtacaacgcattcttctatactctagtctcccaagacactcag
gaggtgtactactctttaaagagacaacgcttcctcgtcaatcagggatacagcttcaaa
gtcatcactaaactagccggaatggatgagagcaacctgaagtacggcaagaagcaagag
cagcagcagttgctgcagcaggtgctgttagcttcagacatcgacgccgaggaagaaaag
atccccggtgacagcgccaagggttcctcacagtacgtacgccgtgttgggaacatgagc
tccatgtccggtgcagacgaccaggtttacattgaataccaaagcagtaaatctaagaag
aacctatctcatcatccactcttcaagaagtttaggtag
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