Asterias amurensis (Northern Pacific seastar): 139949631
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Entry
139949631 CDS
T10870
Name
(RefSeq) U5 small nuclear ribonucleoprotein 40 kDa protein-like
KO
K12857
Prp8 binding protein
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139949631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139949631
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139949631
Complex C
U5 SnRNP specific factors
139949631
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
WD40
WD40_Prp19
WD40_CDC20-Fz
Beta-prop_TEP1_2nd
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
EIF3I
Beta-prop_CAF1B_HIR1
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
Beta-prop_EIPR1
NBCH_WD40
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
WD40_RFWD3
Beta-prop_SPT8
ANAPC4_WD40
Beta-prop_RIG_2nd
WDR90_beta-prop_4th
Beta-prop_DCAF4
Beta-prop_WDR19_1st
Beta-prop_IFT140_1st
Beta-prop_WDR75_2nd
Beta-prop_NWD2_C
PEP5_VPS11_N
WDR54
Motif
Other DBs
NCBI-GeneID:
139949631
NCBI-ProteinID:
XP_071804172
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Position
17:6451417..6460966
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AA seq
347 aa
AA seq
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MPMLEGKRKAEEGALVHLKRPRNELVSSAVGGGTMVQAGPPRTSSLLAPIMLLSGHGAEI
FSAKFHPDGNTLASGSFDRNIFLWSVYGECANYAVLSGHQGAIMELQYTTDGQLVSCSTD
KLLCLWDTETGTRIKKMRGHTAFVNSVYPARRGPSLIVSGGDDGTIKLWDSRKRGVVQTF
QNTYQVLSVTFNDTSDQIVSAGIDNDIKVWDLRKNGMLYKMPGHTDSVTGLSLSGDGSYL
LSNSMDNTLRIWDIRPFAPQERCVKLFQGAQHNFEQNLLRCAWSPDGSKIAAGSADRFVY
VWDTTSRRILYKLPGHSGSVNDIAFHPNEPIILSCSSDKQMYLGEIM
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgccgatgttggaaggaaagcggaaagctgaggagggggcattggtccacctaaagaga
cccaggaatgagttggtctcatcggccgtaggaggtggaacgatggtccaagcgggacca
ccgcgaacatcgagccttcttgctccgatcatgctgctgtctggtcatggagcagaaatc
ttctccgctaaattccatcccgatggaaatactctagcatcaggatcatttgacaggaat
atctttttatggagtgtgtacggtgagtgcgccaactatgcagtgctttctgggcatcaa
ggagcaattatggaactacagtataccactgacggtcagcttgtgtcatgcagcacagat
aaactgctatgtctctgggacactgagacagggactagaatcaagaagatgagaggtcac
acagcgtttgttaattcagtttatccagcaagacgaggaccttcattgatagtcagtggt
ggggatgatggaactataaagctttgggacagtagaaagagaggagtggtgcaaactttc
cagaatacttaccaagttctctctgttaccttcaatgataccagcgatcaaattgtctca
gcaggaatcgataacgatatcaaggtttgggacttgaggaagaatgggatgttatataag
atgcctggacacacagactcagtgactggtttatcgttgagtggtgatgggtcgtatcta
ctctccaactctatggacaatacattacgaatctgggacattcgaccttttgcacctcaa
gaaagatgtgtaaagctcttccaaggcgcacaacataattttgaacagaacctgttaaga
tgtgcttggtcacccgatggtagtaagatagcagctggttctgctgatagattcgtctac
gtatgggacacaacatcaagacgtattctctataaactaccaggacattctggatctgtt
aatgacattgcattccatccaaatgaaccaataattctctcatgctcaagtgataaacag
atgtaccttggagaaatcatgtga
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