Asterias amurensis (Northern Pacific seastar): 139949734
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Entry
139949734 CDS
T10870
Name
(RefSeq) replication factor C subunit 1-like isoform X1
KO
K10754
replication factor C subunit 1
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03030
DNA replication
aamu03410
Base excision repair
aamu03420
Nucleotide excision repair
aamu03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
139949734
03410 Base excision repair
139949734
03420 Nucleotide excision repair
139949734
03430 Mismatch repair
139949734
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
aamu03032
]
139949734
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139949734
DNA replication proteins [BR:
aamu03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
139949734
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
139949734
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RFC1
BRCT
AAA
Rad17
nSTAND3
AAA_22
PTCB-BRCT
RuvB_N
AAA_33
RNA_helicase
AAA_19
AAA_5
AAA_17
AAA_16
BRCT_2
Ribosomal_L22e
AAA_7
NTPase_1
AAA_14
AAA_18
Motif
Other DBs
NCBI-GeneID:
139949734
NCBI-ProteinID:
XP_071804349
LinkDB
All DBs
Position
17:complement(6507737..6527235)
Genome browser
AA seq
1109 aa
AA seq
DB search
MDIRKYFGAVPSSSSTKSKPSSSSNKKRPNGTGGKRKRRLDDDEEDFCDGGKRGKTSSKP
PKMKKTAVIYDSESDEETLPKKRKVPASKSPISVSTKSSSTKKVLSPSPVKKKVTTVSDF
FGASPIQRSSKVTPKKPRLGSEQHEDVDFKQTLEQLDQEHKTPTKSLRTDSIKSTDNSSP
SRRSPRIYKMDVSPAMKKGKGLASKVAEKVRANSTILVENTPERGQGERSSSRSKVTVVE
ETPVSVRQTSKHRKSSDATPTKEKATPTKATPTKATPTIATAIKVTPSKEMPLKASQIEA
AVSAKTPTKATPTKATATKGVRTNATPTDARSSRATPTKTPSVTGSKVETPEQDSASKKK
GGGANYRRYLSRDGPRSLGAKEMPEGEDSCLAGLTFVITGVLDYVEKDEAKEGIERMGGK
VTTTVSKKTSYLITGRDPGPAKIQKAESHGTKILTEDELFDFIRSRPGKKSSTIKKEETA
PKEMPRAVKPPSPVPTQSPKPSTSHQLPSTSSQPKKQPTQAADQSGESLLWVDKYKPHTM
KQLIGQQGDRSCANKLLKWLKRWHDNNAGPNKERGTRFNKDDGFCFKAALLSGPPGIGKT
TTAELVCKELGYETLELNASSSRSKKTLDVIMKEFLHTDSIQGYLKVKGDTSKGSEVKVH
RQCLLMDEVDGMSGNEDRGGVQEFIQMIKKSHIPVICMCNDRNHPKIRSLANHCFDLRFY
RPQVKQIKGAMLSIAFKEGVTIPPLAMEHIITASNQDIRQVLHNMSMWSAGMKKLSQDQV
DSDAQKAKKDLKLGPWDVLRQVFACGEEAEKMSLIDKMGLFFHDYSIAPLFVQENYLSVR
PKKAKGDLKKHLDLISKAADSLCQGDLVDRAIRTTQRWSLLPTQAIFASVVPGETMKGYL
KEMITFPSWLGKNSTRNKNQRLLQEIQQHMRLSAAASIKDVNFDYIPRLRDFLTQPLLTR
ESEGVSEVVELLNSYDLTREDFDTVLEVSQFEGRTKPMAAVPPKVKAAFTRAFNKEGHMM
PYAFGDVGKKRKGAVAMEDGDGYGDEEGAEPAVGEEEDSDDDISKNAMIKVKKTKGESTS
TTSGVKGKGSKGKAAAKGRGTAKGKSKAK
NT seq
3330 nt
NT seq
+upstream
nt +downstream
nt
atggatattcgtaagtattttggagctgttccttcaagttcatccactaagtctaaacca
agcagttcatccaataagaaacggccaaatggaaccggagggaaaagaaagagacgttta
gatgatgacgaggaagatttctgtgatggaggaaagagaggaaagacttccagtaaaccg
ccgaagatgaagaaaactgccgtcatttatgattcagagtcagatgaggagactttgccg
aagaagagaaaagtcccagcctctaaatcacccatcagtgtttccacgaagtcatcatca
accaagaaagtcttgagcccctcccccgtcaagaaaaaggtcacaactgtatcagacttt
tttggcgccagtcccatccagagatcttccaaagtcactcctaagaaaccacgtctgggc
tcggagcaacatgaagatgtggacttcaaacaaactctggaacagttggatcaggaacat
aaaacacctaccaagtctctgcggaccgatagtattaaatcaactgataattcctcacca
tctcgaagaagcccaagaatctataaaatggacgtcagcccggcaatgaaaaaaggtaaa
ggtttggcgagtaaagttgcagagaaagtacgagctaattccacaatcctagtagaaaat
actccagaaagaggtcaaggtgaaaggtcaagttccaggtcaaaggtcactgtggtggaa
gaaacacctgtaagtgtaagacaaacatcaaaacatcgcaaatcatctgatgcaacacct
acaaaggagaaagccacgcctacaaaagccacgcctacaaaagccacgcctacaatagcc
actgctataaaggtcacaccttcaaaagaaatgcctttaaaagcttcacaaattgaagca
gcagtatctgcaaaaacaccaactaaagctacaccaacaaaggccacggctacaaaagga
gttcgtacaaatgccacgcctacagatgccaggtcttcaagggccacacctactaagaca
ccaagtgtgacgggcagcaaagtcgagacacctgaacaagactcagcatcaaagaagaaa
ggaggcggggcaaattacaggagatatttaagccgtgatggaccaagatcacttggtgct
aaggaaatgcctgagggcgaggatagctgcttagcaggattgacattcgttatcactgga
gttctggactatgtagagaaagatgaagccaaagaagggatagaacgaatgggaggtaaa
gttaccacaacagtgtcaaagaaaacgtcttatctcattactggacgcgatcctggacct
gcaaagatacaaaaggctgaatcacacggcactaagattctcacagaagatgaacttttt
gatttcatacgatcaagaccaggaaagaaatcatcaacaatcaagaaggaagaaactgct
ccaaaagagatgcctcgagcagtaaagccaccttctccagtgccaacccagtctcccaaa
ccatcaacatcgcaccagctacccagtacatcatcccaacctaagaagcaacctactcaa
gcagctgaccaatcaggagagagcttactgtgggtcgacaaatataaaccacatactatg
aagcagttgattggccagcaaggagatcggagttgtgcaaataaactcttgaagtggctt
aaacgctggcatgacaacaacgctggacccaacaaagagagaggtactcgattcaataaa
gacgatggtttctgctttaaggctgccttgctttctggacctcctggtattggtaaaaca
acaacagctgagttagtatgcaaggagttgggttatgagacattagaactcaacgccagc
tcgtcacgaagtaagaaaacactagatgtcatcatgaaggagttcttacacactgactcc
atccaaggctacttaaaggtcaaaggtgatacgagcaaagggtcagaggttaaagttcat
cgtcagtgccttttgatggacgaggtcgatgggatgtctgggaatgaggaccggggcgga
gttcaggagtttatccagatgatcaagaaatctcacatccctgtgatctgtatgtgcaat
gatcgtaatcatcctaagattagatcattagcgaatcattgctttgatcttcgattctat
cgacctcaggtcaaacagattaagggtgcgatgttatccattgcattcaaggaaggtgta
accatcccaccgttagccatggagcatatcatcacagcatcaaatcaagatatcagacag
gttcttcataatatgagtatgtggagtgcaggaatgaagaaactcagccaagaccaggtg
gattctgatgctcagaaggccaagaaagatctcaaactgggtccatgggatgtattgcgt
caagtatttgcttgcggtgaggaagcggagaagatgtctctgatcgataagatgggatta
ttcttccacgattattccattgcgcctctctttgtccaagaaaactacttgtctgtccga
cccaagaaagccaaaggagatctcaagaagcatcttgatctgataagcaaagctgcagac
agtttgtgtcaaggggatcttgtggatagagcaatccgtactacccaacgatggagtctg
ttaccaacacaggcgatctttgccagcgtagttcctggtgagactatgaaaggctacttg
aaggagatgattacattcccaagctggttgggaaagaattcaacaagaaacaagaaccaa
agattactgcaagaaatccagcaacatatgagactgtctgcagcagccagcatcaaagat
gtcaactttgactacatcccacgcttacgggattttctaacgcaacctctgttgacccgg
gaatccgaaggcgtgtcagaggtcgttgagttgctcaatagctacgatcttacaagagag
gattttgatactgtgctggaagtgagtcagtttgaaggaaggacgaaaccaatggcagct
gtaccaccaaaggtcaaagcggctttcacaagagcattcaacaaagaaggacacatgatg
ccttatgcatttggtgatgtcggcaagaaacgtaaaggtgctgttgctatggaggatggg
gatggctacggtgatgaggagggggcggagcctgctgtgggggaggaagaggatagtgat
gatgacatcagtaagaatgctatgatcaaggttaagaaaaccaaaggtgaatcaaccagt
acaaccagtggggtcaaaggtaaaggttcaaagggcaaagcagcagccaaaggacgaggg
actgctaagggaaaatcaaaagccaaatag
DBGET
integrated database retrieval system
