Asterias amurensis (Northern Pacific seastar): 139949892
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Entry
139949892 CDS
T10870
Name
(RefSeq) pre-mRNA-processing factor 6-like
KO
K12855
pre-mRNA-processing factor 6
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139949892
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139949892
Spliceosome [BR:
aamu03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
139949892
Complex C
U5 SnRNP specific factors
139949892
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
Suf
HAT_Syf1_CNRKL1_C
TPR_16
TPR_2
TPR_8
TPR_1
TPR_9
ARM_TT21_N
FAT
ARM_TT21_C
ARM_TT21_2nd
NatA_aux_su
TPR_21
TPR_CcmH_CycH
T7SS_EccA1_N
Tcf25
fn2
DUF7790
Motif
Other DBs
NCBI-GeneID:
139949892
NCBI-ProteinID:
XP_071804559
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All DBs
Position
17:complement(10251737..10272866)
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AA seq
926 aa
AA seq
DB search
MATPGGMLNKKKKDFIGISAPLGYVPGLGRGATGFTTRSDIGPAREANDISDDRHPAPKK
KKKDDEDEEEDLNDNNYDEFAGYGGSLFNTGPYEKDDEEADAIYEAIDKRMDEKRKERRE
KRFREEIERYRQERPKIQQQFSDLKRELSDVSEDEWLNIPEVGDARNKHQRNAKADKITP
MPDNFLSKHAMSTESMTTLDPRQQALGGMATPYPGGMTSSGDYDLRKIGEARNTLMDVKL
NQVSDSVSGQTVVDPKGYLTDLQSMLPSYAGDVADVKKARLLLKSVRETNPNHPPAWIAS
ARLEEVTGKLQAARNIIMRGSEVCPRSEDVWLEAARLQPGDTAKAVIAQAVRHLPNSVKI
WIRAADLELETRARRKVFRKALEHIPNSVKLWKSAIELEGPEDARILLSRAVECCPTSVE
LWLALSKLENYENARKVLNRARENIPTDRKIWISAAKLEEAERNHLNVDKIIDRALTSLR
SNMVEINREQWIKDAEECEKAGSIATCQSIIRAVIGVGLEDEDRETTWMDDADSCASHQA
IECARAIYAHALTGFPSRKKIWLEAAYFEKNHGSRESLESLLQKAVGHCPKAEVLWLMGA
KSKWLAGDVPAARSILALAFQANPNSEEIWLAAVKLESENNEDERARRLLARARNSAPTA
RVWMKSVKLEWQLGSIEKARQLLDEGVKHYPDFSKLWMMRGQIAEQLGEREDARKTFQQG
LKKCARSVPLCLLAARLEEKIGNLTKARAMLEKARLMNPQCPELWLEAVRIESRSGNKNV
AQATMARAMQDCPGSGILWAEAIFLEARPQRKTKSVDGLKRCEHDPHVLLAVSKLFWSER
KISKAREWFNRTVKIEPDLGDAWANFFRFEIQHGNEEQQESVRKRCVEAEPRHGELWCSV
SKNIANWRCKTNEILPMVATLISTVF
NT seq
2781 nt
NT seq
+upstream
nt +downstream
nt
atggcgactcccggtggtatgctaaacaagaaaaagaaggatttcatcggcatatctgct
ccacttggttatgtacctggcttaggaagaggagctactggattcacaactcgatctgat
attggaccggcaagagaagcaaatgacatcagtgatgacagacatccagctccgaagaag
aagaagaaagatgatgaagatgaggaggaagatttaaatgacaacaactacgatgagttt
gctggctacggtggaagtctattcaacactggaccctatgagaaagatgatgaagaggca
gacgctatatatgaagccattgataaacggatggatgaaaaacgcaaggaaagaagagaa
aagcgatttcgtgaggagattgagcgatacagacaggaaagacccaagattcaacagcag
ttttcagatcttaagcgtgaactgtccgatgtaagtgaagatgaatggctgaatatccca
gaagttggtgatgctcggaataaacaccagcggaatgccaaggcagacaaaatcacccca
atgcctgacaactttctgtcgaaacacgccatgagcactgaatccatgacaacccttgac
cctcgccagcaagcccttggaggtatggcgaccccgtatccaggaggcatgacctcatct
ggagattatgacctgaggaagataggagaagcacgaaacaccctaatggacgtcaaactg
aaccaggtgtctgactctgtcagtggacagacagtggttgaccccaagggttacctgact
gatctacagagcatgcttccatcctacgctggggacgttgccgatgtgaagaaggctaga
ctgcttctcaagtcggtcagagagaccaaccctaaccatcctcctgcttggattgcctct
gcccgtcttgaggaagtcacagggaaacttcaggctgctagaaacatcatcatgagaggt
tctgaagtgtgtccacgtagtgaagatgtgtggcttgaggctgctagattacagcctggt
gacactgcaaaggctgttattgcccaggctgtccgccatcttcccaactcagtcaagatc
tggatcagggcagcagaccttgagctggagactagagcaagaagaaaggtctttagaaaa
gcgttggaacacattcctaactctgtaaagttgtggaagtcagcgatcgagctggaggga
ccagaggatgctagaatcctactcagtcgagctgtagagtgttgtccgacaagtgtagag
ctttggttggccctctcaaaactggagaactatgaaaatgctcggaaggttctcaacaga
gctagagaaaacattcctaccgatcgtaagatttggatttcagccgctaagctggaagag
gcagagcgaaaccatctgaatgtagataaaatcatcgacagagctttgacatcgttacgg
tccaatatggtggagatcaacagagagcaatggatcaaagatgcagaggagtgtgagaaa
gctggtagtattgcaacatgccagtccattatacgcgcagtaatcggtgttggtcttgag
gatgaggatcgtgagacaacctggatggatgatgcagatagttgtgcgtcccaccaagcc
atagagtgtgcccgcgctatttacgcccatgccctgactgggttcccaagtcgcaaaaag
atctggctggaagctgcttattttgagaagaaccatggatcaagagaatcgttagagtct
ctactgcagaaggctgtaggacactgtcctaaggctgaagtactgtggctcatgggtgct
aaatctaaatggcttgctggtgatgtaccagccgcccgtagtatcctagccttggccttc
caggctaacccaaacagcgaagagatctggttggctgccgtcaaactagagagtgagaac
aacgaggacgagagagcgcgcagactgctagcaagagcaagaaacagcgcccccacagcc
agggtatggatgaagtcagtcaaactggagtggcaactgggcagcattgagaaggctcga
cagttactggatgaaggagtcaaacattacccagacttctctaagttatggatgatgaga
ggtcaaattgctgagcagctcggggaaagagaagatgcaagaaagacattccaacagggt
ctgaagaagtgtgcccggtctgttcctctgtgtctccttgcagcaagactagaagagaag
atcgggaacctgaccaaggcaagagcaatgctggagaaagctcgactcatgaatccacag
tgtccagaattatggcttgaggctgtaaggatcgaatctcggtctggaaacaagaacgtt
gcccaagccacgatggccagagcaatgcaggactgtccaggatcagggattctatgggct
gaggccatcttcctagaggctcgaccacaaaggaagactaagagtgtagatggactgaag
agatgcgagcatgacccacatgtactgctggcagtttccaagttattctggagtgagcgt
aagatcagcaaggcgagggaatggttcaatcgaacagtcaagattgaaccggatcttggg
gatgcttgggctaacttcttcagatttgaaatacagcatggaaatgaggaacagcaagag
tcggttcggaaacgctgtgtggaagcagagccccgacatggtgaattatggtgtagtgta
tcaaagaacatcgccaactggagatgcaagaccaatgagatcctcccgatggtggccacc
ctcatcagcactgtcttctag
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