Asterias amurensis (Northern Pacific seastar): 139950252
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Entry
139950252 CDS
T10870
Name
(RefSeq) general transcription factor IIH subunit 2-like
KO
K03142
transcription initiation factor TFIIH subunit 2
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03022
Basal transcription factors
aamu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
139950252
09124 Replication and repair
03420 Nucleotide excision repair
139950252
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aamu03021
]
139950252
03400 DNA repair and recombination proteins [BR:
aamu03400
]
139950252
Transcription machinery [BR:
aamu03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIIH
139950252
DNA repair and recombination proteins [BR:
aamu03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TFIIH complex
139950252
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ssl1
VWA_2
C1_4
VWA
vWA_Rv0959
Motif
Other DBs
NCBI-GeneID:
139950252
NCBI-ProteinID:
XP_071804968
LinkDB
All DBs
Position
18
Genome browser
AA seq
406 aa
AA seq
DB search
MADEEQEKTYTWEGDYEKTWEALREDEHGSLQTTVDDIILRAKRKRLADRPPNIRLGMMR
HLFVVLDMSRSMEDPDLRPSRLRCSIKLLATFIEEYFDQNPISQIGLITTSNMRAEKLTD
LGGNPKRHVAALEKCKDKSCSKEPSLQNALDLAASSLRHMPGHASREILVILGSLVTCDP
GDIHQTIKVMKELNIRCSVIGLAAEVRICRKLCTVTQGTYGVPVDESHYRELLKEHTNPP
PATVNTEPAPIRMGFPQHVLHTEKDKMEKPSMCMCHLDVKGHVGFGSSGYFCPQCRSKYC
ELPVECKVCALTLVSAPHLARSFHHLFPLGDFLEVQRETLHSEENLFCFSCQRELKEATV
FQCSTCLHTFCLDCDLFIHESLHSCPGCASTRSDQSRTSKESHHKR
NT seq
1221 nt
NT seq
+upstream
nt +downstream
nt
atggctgatgaggaacaagaaaagacgtacacctgggagggagactatgagaaaacctgg
gaggcacttcgtgaggatgaacatggttcccttcagacgacggtggatgacatcatactg
agagctaaacggaaacgtttggcagacagaccacccaatatccgtctaggaatgatgagg
cacctctttgtggtgcttgacatgtcccgatctatggaagacccagaccttagaccaagt
cgactccgttgttcaatcaagttgttggcgacgtttattgaggaatactttgaccaaaat
ccaatcagccagatcggtctgattacgaccagcaatatgagagcagagaaactaacggac
cttggaggaaatcctaagcgtcatgttgcagctttggagaaatgcaaagacaaatcatgc
tccaaggaaccctctcttcagaatgctctagatctggccgcttcatccctcagacatatg
cctggtcatgcaagccgtgagattctggtcatcttagggagcttagtgacttgcgatcct
ggagacattcatcaaactatcaaggtgatgaaggagttaaacattcgctgctctgtgatt
ggtctcgcagccgaggtcagaatttgtcgcaagctctgcacagtgacgcaaggaacttac
ggagtaccggtggacgagagtcactatagagagttacttaaagaacacaccaatccccct
cctgccaccgtgaataccgaaccggcaccgattcgaatgggatttcctcagcatgttctt
cacactgaaaaggacaaaatggaaaaaccctcaatgtgcatgtgtcatcttgatgtcaaa
ggtcatgtaggcttcggctcaagcggttatttctgccctcaatgtcgaagcaagtactgc
gaactgccggtggagtgcaaagtctgtgctctgacgctagtctccgctcctcatctggct
cgttctttccatcatctcttccctcttggagacttcttggaagttcaacgagagacgctc
cactcggaagagaacttattctgtttttcgtgtcaacgtgaactcaaggaagccacggtt
ttccagtgctccacctgtcttcataccttctgtctggattgtgacctcttcatccacgag
tctctccactcatgcccaggatgtgcaagcacaaggtctgatcagtcaagaacctcaaag
gaatctcaccacaagaggtga
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