Asterias amurensis (Northern Pacific seastar): 139950459
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Entry
139950459 CDS
T10870
Name
(RefSeq) pre-mRNA 3' end processing protein WDR33-like
KO
K15542
polyadenylation factor subunit 2
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139950459
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139950459
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
139950459
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_WDR3_1st
Beta-prop_WDR5
WD40
Beta-prop_THOC3
WD40_CDC20-Fz
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
Beta-prop_WDR3_2nd
Beta-prop_EML
WDR55
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_IFT140_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_WDR36-Utp21_1st
Beta-prop_WDR36-Utp21_2nd
Beta-prop_Aladin
Beta-prop_EIPR1
WD40_MABP1-WDR62_2nd
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
WDR90_beta-prop_4th
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_Vps41
PROPPIN
Beta-prop_WDR35_TULP_N
Beta-prop_WDR41
Beta-prop_HPS5
Beta-prop_DCAF12
Beta-prop_RIG_1st
Beta-prop_SPT8
Beta-prop_IFT122_2nd
Motif
Other DBs
NCBI-GeneID:
139950459
NCBI-ProteinID:
XP_071805247
LinkDB
All DBs
Position
18:7793397..7811449
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AA seq
992 aa
AA seq
DB search
MEGGGSTAVASPPTGQGFFHRPRLPYREKNQFYKHHHYYNRMQGDQGPNNATNFDGKRMR
KSITRKTVDYNSSVIKLLESRIWQRDSRDIRWIQPDPTYTHELSLPETYLNNPINAVTTR
FVRTSTNKIRCPIFCCAWTPEGRRLVTGASSGEFTLWNGLTFNFETILQAHDYPVRAMTW
SHNDLWLMTADHLGYVKYWQSNMNNVKMYQAHKDQPIRGVSFSPTDTKFTTCADDGTVRI
FDFMRCHEERVLRGHGAEVKCIDWHPQKGLIVSGSKDSQQPVKLWDPRSNNPLATLHAHK
STVMAVKFNQNGSWLLTASRDHVCKLFDIRTMKELYTFRGHKKEATAIAWHPIHESMFAS
GGSDGSLLFWQVGNEKEVASVETAHDSIVWSLAWHPLGHILASASNDHTTKFWTRNRPGD
RMRDRYNLNMLPIGTSEEMLEFDDDTSALSVIPGMGLEHGLPDHLKKTDEKQLDDSMGLD
TSIPGLESSVEELAKLKPQPQRKVPYAKPIPADFQRQWDMTKAPGIAPQQAEAQDVKDGA
KQVKEEDKEAEKMAVMVKTSGLAVAQAHQAVVNAMKNASENGGQPPIPGLMSDPPPGPPL
MATHQGMIVDTPPGLRPSAPSQGKPAIPSLMDMRLNGPPPGASQPPDIDMMNMPAPDYNQ
TPDKPVHDFVNVSPPPPPPEVFPGQVFGETRDEDKRGDVDLRQGFTDVDMRHRFHEPPPP
NRFEGRFEHKESQQGIWENRTTPRDGPHQDLDMRQHRMEESKDAAFEDRQDQDTGPRRDE
LFDEDFRFSSGGTPGGQTWRQQNQQEGHQRDPFGGFDQNQESGPFGSRDKDLRSGGRFDQ
EFHSKGLLPHPGVEENNQPPTVIGDHDERGSFGGEHDPSWGHQQNSNELPQNKRTWNEGP
GDDLEQEQFGQFGQPDAFGPRGRGRGNMWRSGPRDRRGMRGRGEPGMRGRGEPGMRGRGE
PGMRGNPSGFRGSFRGSRGGMGRGGMGRGNGW
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggaaggaggtgggagcacagctgtggcctcgccaccaactggtcaaggattcttccat
cgcccaagactgccctaccgagagaagaaccagttttacaagcaccaccactattacaat
cgcatgcaaggtgaccaaggcccaaacaatgctaccaattttgatggaaaacgtatgcgg
aagagcatcactagaaaaactgttgactacaactcatccgtcatcaaattgcttgagtct
cggatctggcagagggatagtagagacattcgctggatacagcctgatccaacttatacg
catgagctatcactaccagagacttatttgaacaatccaataaatgctgttacaacaagg
tttgtcaggacatctaccaacaagatccgatgccctatcttctgctgtgcttggacacct
gagggccggagacttgtaacaggagcgtcgagtggagagttcaccctttggaatggtctc
acatttaactttgaaacaatcttacaggctcatgattatcctgtccgagctatgacatgg
agtcataacgacctctggcttatgactgctgatcaccttggttacgtcaaatactggcag
tccaatatgaataatgtcaagatgtatcaggctcataaagaccaaccaatccgtggtgta
agcttctcaccaacggatactaagtttacaacatgtgctgatgatggcaccgtacgtatt
tttgattttatgcgatgtcatgaggaacgtgtacttagaggtcatggtgcagaagtcaaa
tgtattgactggcatccacagaagggactgattgtatctggtagcaaagatagccagcaa
ccagtcaagctgtgggatccacgctctaacaaccctttggccaccttacatgcccacaaa
agcactgttatggcagtcaagttcaaccagaatggaagttggcttctgaccgcatcgagg
gatcatgtctgcaaactatttgatatcagaacaatgaaagagctgtacacatttaggggt
cataagaaagaggccacagcaattgcttggcatccaatccatgaaagcatgtttgcgagt
gggggttcagacggttcccttcttttctggcaagttgggaatgagaaggaggttgctagt
gttgagacagctcatgatagtattgtatggagtcttgcttggcatcctttgggtcacatc
ctagcctctgcttctaatgatcatactaccaaattctggactaggaatcggcctggtgat
cgcatgagggatcgatataacttgaacatgctaccaattggtacatctgaggaaatgttg
gagtttgatgatgatacctcggctttgtccgtcatccctggaatgggactggaacatgga
ctaccggatcaccttaaaaaaacagatgaaaaacaacttgatgacagtatgggattggac
acctctattcctggcttagaatcttctgtggaagagttagccaaactgaagcctcagcca
caacgcaaagttccttatgccaaacccattccagccgattttcaacgacaatgggacatg
acaaaggcacctggcatagccccacaacaagctgaagctcaagatgtaaaggatggtgct
aaacaagtcaaggaggaagacaaggaagctgagaagatggctgtgatggtcaaaacatca
ggcctggccgtagcacaagctcatcaggcggtggtcaatgccatgaagaatgcctcagag
aatggcggacagccaccaatcccaggtttaatgtcggatccgccgccaggaccccccctc
atggcaacccatcaaggtatgatagttgacactccaccaggattgagaccttctgctcct
tcccagggtaagccagccatcccttcactcatggatatgaggttgaatggtcctccaccg
ggtgcttctcagccaccagatattgacatgatgaatatgccagcgcctgattacaatcaa
actccagataaacctgttcacgactttgtaaacgtatccccgcccccacctccaccagaa
gtttttccggggcaagtatttggtgaaaccagagatgaagataaacgtggtgatgttgac
cttcgtcaaggcttcacagatgtggatatgagacacagatttcatgaaccgccgccacca
aacagatttgagggaagatttgagcacaaggaaagtcaacaaggtatttgggagaatagg
actacaccacgcgatggtccccatcaggacttggatatgagacaacatagaatggaggaa
tccaaagatgcagcatttgaagacagacaagatcaagacacaggtccaagaagggatgaa
ttgttcgatgaagattttcgtttcagtagtggtggtactccaggaggacagacatggcga
caacagaaccaacaagaaggacatcaaagagatccttttgggggatttgaccaaaaccaa
gaatctggcccatttggatcacgtgataaagatctacggagtggaggccgatttgatcaa
gagtttcattccaaaggattgctaccacatccaggtgttgaagagaataaccagccacca
acagtgattggggaccatgatgaaagggggtcttttggtggtgagcatgacccatcatgg
ggacaccaacaaaatagtaatgaattgccccaaaataaaagaacgtggaatgaaggacca
ggggatgatcttgaacaagaacagtttggtcaatttggccaaccagatgcctttggacca
cgtggacgtggaaggggcaacatgtggcgaagtgggccaagagacagaaggggaatgagg
ggtaggggggagccaggaatgaggggtagaggtgagccaggaatgaggggtaggggtgag
ccaggaatgaggggtaatccctcaggattcagagggtccttcagaggtagtagagggggt
atgggtaggggaggaatgggcagaggaaacggctggtaa
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