Asterias amurensis (Northern Pacific seastar): 139951702
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Entry
139951702 CDS
T10870
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG9-like isoform X1
KO
K18735
protein SMG9
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139951702
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
139951702
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Smg8_Smg9
ABC_tran
URGCP_GTPase
MMR_HSR1
GBP
NB-ARC
AAA_29
Motif
Other DBs
NCBI-GeneID:
139951702
NCBI-ProteinID:
XP_071806828
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Position
19:complement(3905966..3918581)
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AA seq
525 aa
AA seq
DB search
MSSKVPGGIVGGASGSSTGGARRRRRRGRSKTQEDLRDETSSPQLSKPTIILAKSTASQP
QSKSDLYGSSPEPGGASLSSQTGEPAKSTPQFKIKARPSECTPYKPIPTFPQANSSSMNY
QSPVTTAIYASSPSQGDAGQSGAGSYSAASKPAGQVTRPLGQSSATPVFTIEVPVHNRLT
APPDMKQSVKLVDDNLQWCDNGMEMLLDHTDFLVVGVLGLQGSGKSTLMSILAGSSVSDN
KSPYIFKPQTREIRNQSMHQTTGIDFYVTNERVMILDTQPVLSSSVMDSLMSHEKSLPPD
VTSAENCNEIQSLQLASFLLTVCHVVLIVQDWFLDINLVEFLKRAEMLKPPTPSPSPALE
GSNNEETEDFFPNVVFVLNKARQEDFQVTAVQSMQESIAKLFKDSKLTLQGTASVAHTKL
LPGLNRKNLPLDVNLFVLPRFDKTPAENSSSEDHSILLSLLPVSYQGHPSVELLTKAFRN
QIYGAARTSLTHTSLTEKNWFHYAARTWEAIKKSSLMSEFNRLLT
NT seq
1578 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcaaaagtaccaggaggaattgtgggcggagctagtgggagtagcactggggga
gcaagacgacgcaggagaagaggcaggtcaaagacgcaggaagatctaagagatgagaca
agttctcctcagctgagtaagccaacaataattcttgccaaatctactgcatctcaacca
cagagtaaatcagatttgtatggctcatcaccagaaccagggggtgctagcctttcatcc
caaacaggtgagcctgcaaagtctactcctcagtttaaaatcaaagctcggcccagtgaa
tgtactccctataaacccattccaactttcccacaagccaactcctcatcaatgaactat
caatctcctgttaccacggcaatatacgcatcgtccccgtcacagggagatgcaggacag
tctggtgctggtagttactctgcagcttcaaagcctgcgggtcaggtgacaagaccactt
ggacagtccagtgcgaccccagtgtttaccatagaggttcctgtccacaatcgactgacg
gcaccaccagacatgaagcaaagtgtgaaactagtggatgataacctgcagtggtgtgac
aatggcatggagatgttacttgaccacactgattttctagtagttggtgtactggggtta
caaggtagtgggaagtccactctgatgtccatactggctggaagtagtgtcagtgacaat
aaaagtccctatatcttcaagccacaaactagagagatcaggaaccagtctatgcaccag
actactggtattgacttctatgttaccaatgaaagagtaatgattctggatacgcaaccg
gtactcagctcttcagtaatggacagcttaatgagccatgagaagagtctgccgccagac
gtgacatcggctgaaaactgcaatgaaatacagtctcttcagcttgcctcatttcttttg
acggtgtgtcacgtcgtcctcattgttcaagattggtttctggacattaatctggtagag
ttcctcaaacgagctgaaatgttgaaaccccctactcctagccctagcccagcattggaa
ggttccaataacgaggaaacagaagacttcttcccaaatgttgtgtttgtgttgaacaaa
gcaaggcaagaagacttccaagtgacagctgttcagtcaatgcaggaaagtatagccaaa
ctcttcaaagattcaaaacttactctccaaggaacagcgtcagtagctcacacaaagctc
ctaccaggtctaaacagaaagaatctaccactggatgtgaatttgtttgtgctaccaaga
tttgataagacacctgcagagaactcgtcatcggaagaccattctattctgctgagtctg
ttaccggtctcctatcaaggccatccaagtgtagaactcttaaccaaggcattccggaac
cagatttatggagctgctcgaacgtctctgacacacacttcactcacagaaaagaactgg
ttccattacgcagcacggacctgggaggcaataaagaaatccagtctcatgtcagagttc
aacagacttctgacctga
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