Asterias amurensis (Northern Pacific seastar): 139952531
Help
Entry
139952531 CDS
T10870
Name
(RefSeq) ATP-dependent DNA/RNA helicase DHX36-like isoform X1
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
139952531
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139952531
03012 Translation factors [BR:
aamu03012
]
139952531
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
139952531
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
139952531
Translation factors [BR:
aamu03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
139952531
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
HA2_N
nSTAND3
AAA_22
ATPase
AAA_19
Tyr-DNA_phospho
NACHT
RsgA_GTPase
NB-ARC
ABC_tran
TsaE
PhoH
PilO
AAA_23
Motif
Other DBs
NCBI-GeneID:
139952531
NCBI-ProteinID:
XP_071807790
LinkDB
All DBs
Position
20:4956492..4970324
Genome browser
AA seq
1009 aa
AA seq
DB search
MQERQRAECEVKSQTQELTHITVKHLDFGLVLLVICCRSGAIMSYRGRRGRYNNRRGGSY
HGNRRPRWEDEEEGGASGWDGNSGGRGRGQGRGGGGGRPPRGLKGRDLGMWYAARSQAKK
RDDEIKNRSVVDMRPSHEKHIRTLLDDVKHEGTEDKLEFKDVKKLNPLEESSRSFYRHPL
TRDEALDSRLQQQHVSKQTDNERYKNMQTFRKKLPSYKMRQELLQLIHDNQVVVISGETG
CGKTTQVPQFILDQHLENGTGSMCRVICTQPRRISAITVAERVASERAEPCGNGSSTGYQ
IRLEARLPRQQGCILYCTNGILLKWLDSDPLLQSVSHVVLDEVHERDIMSDFLLVILKDV
LPKRPKLKIILMSATLNAELFSEYFGGCPMTNIPGFTFPVVEFWLEDVLTMTRYQPPEKR
DQREPKWVKFKRGKRYRQEELKKEEEFQEKFSEYIKEIRPSYPEEVVYYLENMDHEAMDL
ELVSSLVRFISLNKPDGAVLVFLPGWEQISKLNDLLTQQQMFKSDRFRIIPLHSMMPTAS
QRQVFERPPAGVRKIIIATNIAETSITIEDVVYVVDLGRVKERNFDVANNLSTLKPEWVS
TAAAHQRRGRAGRVQPGECYHLYSQLQSSLLIDYQLPEMLRTPLDELCLQIKSLKLGRVH
DFIQKALQHPDPRAVDLALESLTRMNALDENEQLTPLGYHLARLPVAPSIGRMILFGAMF
CCLDPVLTIAASLSFKDPFVIPLGKEKMADARRKLLSEETFSDHLMLVNAFDGWEDAREH
GRQAENDFCWRNFMAATTLKMLDNMKTQFCELLASLGFVQHKSCKQPAANRNSGNRELIK
AVLCSGLYPNVAQVRGNSFNRRAGKHRPAKIMTPQDGQVKIHPKSVNCDESQFPSNWILY
HLKMKSTSVFLHDTSAVEPYPLLFFGGKIGVTTEDGHETITVDDHIKFHAPATIANLVKD
LRQELDRLLRQKINKPGMIQWGQDCKEGRIMQAIIDLITTEEEHDQADW
NT seq
3030 nt
NT seq
+upstream
nt +downstream
nt
atgcaggaacgtcaacgagctgagtgtgaagtcaagtctcaaacacaagaacttactcat
attactgtcaaacatctggattttggcttggtgctactcgtgatctgctgtagatcaggt
gccattatgagttacaggggacgccgtggccgatacaacaaccgcagaggaggctcgtac
catggcaaccgccgacctagatgggaagacgaagaagaaggaggagctagtggatgggat
gggaacagcggagggagagggcggggacaaggaagagggggaggaggaggaaggccccct
cgtggtcttaagggtcgggatctcggcatgtggtatgcggcacgaagtcaagccaagaaa
cgagatgatgaaattaaaaatagatcagttgttgacatgagacccagccatgagaagcac
atccgtaccttattggatgacgtcaaacatgaaggcacagaggacaaactggaattcaaa
gatgtaaaaaagttgaatccactagaggagagttcccgttctttctaccgtcatcctctg
actcgggacgaagcattagactctaggctgcagcagcagcatgtatccaaacagactgat
aacgaacgctacaagaacatgcagacattccgcaagaagctcccatcatataaaatgaga
caggagcttcttcagctgatacatgataatcaggtagtagtgattagtggtgagactggg
tgtggtaagacaacccaagtacctcaattcatcctagaccagcacttggagaatgggaca
ggatcaatgtgtcgtgtaatctgcacgcagccacgtaggatatctgctataacagtagca
gagagggtggcgtctgagagagcagagccatgtggcaatggaagtagcacagggtaccag
attagactggaggccagactaccaagacaacagggttgtattctctactgtacaaatgga
atacttcttaagtggctggactcagacccacttctgcaaagtgtgagtcatgtggtcctt
gatgaggtgcatgaacgagacatcatgtctgatttccttcttgtcattctcaaagacgtc
ctgccaaaaagaccgaaactgaaaatcatcctcatgagtgcgacgctgaatgccgaatta
ttctcagagtatttcggcggctgtccgatgaccaacatccctggctttacgttccctgtg
gttgagttctggctggaagacgtactcaccatgactaggtaccagccaccagagaaacga
gatcaacgcgagcccaagtgggtgaagttcaaacgcggaaaacgataccgtcaagaagaa
ttgaagaaagaggaagagtttcaggagaagttcagcgagtatatcaaagagataagaccg
agttaccctgaggaggtcgtttattaccttgagaacatggaccatgaagcgatggacttg
gaacttgtgtcttcactcgtcaggtttatcagtctcaacaaaccggacggagctgtgttg
gtattcttaccaggatgggagcagatctctaagttgaatgaccttttgacccagcagcag
atgtttaagagtgatagattccgcatcatcccactacactccatgatgccgaccgcgagc
caaagacaggtgtttgagcgccctccagcgggtgtgcgtaagatcatcatcgcaaccaac
atagcggagacgagtatcaccatcgaggacgtcgtgtacgtggtcgacctcggcagggtc
aaggagagaaactttgacgtggccaacaacctgagcacactaaaaccagaatgggttagc
acggcagcggctcaccagagaaggggtagagctggaagagtccaacccggtgaatgttac
cacctgtacagtcagttgcagtcctccttgctgatagactaccagttgccggagatgtta
agaacgccattggatgaactctgtctacaaatcaagtccttgaagctcggacgggttcat
gacttcatacagaaggcccttcagcatccagacccacgcgcagtagacctagccttggag
agcctcaccagaatgaatgccctagatgagaacgagcaactcacccctctcggttaccac
cttgcccggctccctgtagcgccctctattggcaggatgattctattcggtgcgatgttc
tgctgtctggaccccgtattgaccatcgcagctagcctgagtttcaaagacccgtttgtc
attccattgggcaaagagaaaatggctgacgctcggaggaagctactatctgaagaaaca
ttcagtgaccatctaatgctggtcaatgcattcgacggctgggaagatgcgagagagcat
ggtcgccaagcagagaatgatttctgctggaggaacttcatggcggctacaacattaaag
atgcttgataacatgaagacacagttctgtgagcttctggcatcgcttggttttgttcaa
cacaagtcctgcaagcagcctgctgcaaatagaaactcagggaatcgggagctgatcaaa
gccgtcctatgctcggggctgtacccaaatgtggctcaggtcagggggaactcattcaac
agacgagctggaaagcacaggccagccaagattatgacaccgcaagacggccaagtgaag
atccatcccaagtcagtcaactgcgacgagagtcaatttccgtcaaactggatcctctac
cacctcaagatgaaatcaaccagtgtattcctacatgataccagtgctgtagagccttat
cccttgttgtttttcggcgggaagatcggagtcacaactgaggacggccatgaaacgatc
accgttgatgatcacatcaagttccatgcaccagcaacaatcgcaaatcttgtcaaggat
cttcgtcaagagcttgacagactgctgaggcagaagatcaacaagcctggaatgatccag
tggggtcaggattgtaaggaaggacgcattatgcaggctatcatcgacctgatcacaaca
gaagaagagcatgatcaagctgactggtag
DBGET
integrated database retrieval system
