Asterias amurensis (Northern Pacific seastar): 139952588
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Entry
139952588 CDS
T10870
Name
(RefSeq) HBS1-like protein isoform X1
KO
K14416
elongation factor 1 alpha-like protein
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
139952588
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamu03019
]
139952588
Messenger RNA biogenesis [BR:
aamu03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
139952588
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
GTP_EFTU
GTP-eEF1A_C
GTP_EFTU_D3
HBS1_N
GTP_EFTU_D2
MMR_HSR1
AAA_22
Motif
Other DBs
NCBI-GeneID:
139952588
NCBI-ProteinID:
XP_071807871
LinkDB
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Position
20:complement(12296720..12316952)
Genome browser
AA seq
729 aa
AA seq
DB search
MSRHRNVRGMDYGEDYEGYDDVYGHSVEEDYGVSPSTAEQFIFHRSLQHHQLASFLEEGE
EDLQQAEGDQTRRDSDQPLNDSRNFKKPELSDIEEAQLQSCLEEIRNVVGDAIPEHVLVE
TALAHKFNFEKALNAILDHQESGGGQRRSNNNTETQTATAAAPPRQQQPPSTKPKRPMPG
ANPEDDKVAAVTPEVAKMSFPSKQAKRGFELGPVPSGDVRRKSASLRPKPMSGFMDDISD
LQVRSEHQGKLPTVMSAPDLTAMVGSTFAPPGLPVIPQRKESRNSKIGTIDISAEYRKRQ
EGKQLINLVVIGHVDAGKSTLMGHLLYLIGQVNQRQMHKYEQESKKQGKASFAYAWVLDE
TGEERQRGITMDVGLTSFETPNRTVTLLDAPGHKDFIPNMITGAAQADVAILVVDATRGE
FETGFDSGGQTREHALLVRSLGVTQLAVAINKLDTVGWSEVRFNEIVGKLGHFLKQAGFK
DSDVQFIPCSGLTGENLKDRAKESALTAWYKGQSLMERIDCLKAPKRPVDKSYRQCVSDV
FKGMGAGISIAGKIESGGVQVGDKVVIMPAAEHGQVRGVYIHEEETRWACAGDHATVVVT
GIDQVNVSVGSVMCCLEQPIPVTSRFRARVIMFNLDVPVTRGFPVVLHYQADSEPAVVRK
LISTLHKSTGEILQKRPKCLTKQSNAIIEIETSRPVCLELYKDYKDLGRFMLRYSGSTIG
AGVVIEIKS
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcaagacataggaacgtgagggggatggactatggggaggattatgaaggctatgat
gatgtttatggtcactcagtggaggaagattatggtgtctctccatcaacagctgagcag
ttcattttccatcgcagccttcagcatcaccagctagcatcttttcttgaagaaggggaa
gaggatttacagcaagctgagggcgatcaaacaaggagggactctgaccaacctctgaac
gactccaggaacttcaagaagccagagctctcagatattgaagaagctcagcttcagtca
tgcttggaggaaatccgcaatgtagtaggagatgccatccctgagcatgtcttagtagag
actgccctggcgcacaaattcaactttgagaaagctctgaatgccattcttgatcaccaa
gagagcggaggaggccaacggaggagtaacaacaacacagagacccagacagcaacagca
gcagcaccacccaggcagcagcagcctccgtcgaccaaacccaaacgccccatgccggga
gccaacccagaagacgacaaagttgcagccgtcactccggaggtggcaaagatgagcttc
ccatccaaacaggccaagagaggattcgaactgggacccgtcccaagtggagatgtacgg
agaaagagtgcttcactaaggcctaagccaatgtcggggtttatggatgacatttcggat
ttgcaagtcagaagtgaacaccaaggaaagcttccaacagttatgagtgccccggatctg
acggcgatggtggggtcaacatttgctcctccagggctccctgtcatccctcagagaaaa
gagtccagaaactccaagatagggacaatagacatctctgcagagtataggaagaggcag
gagggaaaacagctcatcaacttggttgtgattggtcatgtagacgccggtaaatcaaca
ctaatgggtcatctcttgtatctgattggtcaggtgaaccagagacagatgcacaagtat
gaacaggaatccaagaaacaaggcaaggcatcatttgcatatgcctgggtgcttgatgag
acgggtgaagaaagacagaggggcattacgatggatgtaggtttaaccagttttgagacc
cctaatagaacggtgaccctcctcgacgcccccggtcataaagatttcatccccaacatg
atcacaggagctgcacaggcggacgtagccatcctggtcgtcgacgccacaaggggagaa
tttgagactggatttgattccggtggccagacaagagaacacgccctcctggtccgatca
ttaggggtgactcagctggctgtagccattaataaactagacactgtgggctggtcggag
gtcaggttcaacgagattgtaggcaagctgggacatttcttgaaacaggctggttttaag
gattctgatgttcagttcattccctgcagtgggctgacgggtgaaaacctcaaagacaga
gctaaagagtctgccctgactgcgtggtacaaaggacagtcacttatggaacgaatagac
tgtctgaaagctccaaagagacctgttgacaaatcttatcggcaatgtgtatcggatgta
tttaaaggtatgggtgctggtatcagcatagccggtaagatagagtctggaggggtgcag
gttggcgataaagtggttattatgccggctgctgaacatggacaggtcagaggtgtttat
atccatgaggaagagacgaggtgggcctgtgcaggggaccatgcaacggtagtggtaacc
ggcatagatcaagtcaatgtcagtgtcggtagtgtcatgtgttgtcttgagcagcctatc
cctgtgacgagtcgttttagagccagggtcatcatgttcaacttggacgtaccggtgacg
aggggcttcccggtggtacttcattaccaggctgatagtgaaccagccgttgttcgtaaa
ctcatcagtactttacacaagagtaccggggaaattctgcaaaagaggccaaagtgtctg
acgaagcagagtaatgctataatagagatagagacgagcaggcccgtatgcctagaactg
tataaagactacaaagatttaggacgatttatgctcagatacagcggctcaacgattggt
gctggtgttgtaattgagatcaagagctag
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