Asterias amurensis (Northern Pacific seastar): 139952851
Help
Entry
139952851 CDS
T10870
Name
(RefSeq) probable ATP-dependent RNA helicase DDX46
KO
K12811
ATP-dependent RNA helicase DDX46/PRP5 [EC:
5.6.2.7
]
Organism
aamu Asterias amurensis (Northern Pacific seastar)
Pathway
aamu03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aamu00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
139952851
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
aamu03041
]
139952851
Enzymes [BR:
aamu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
139952851
Spliceosome [BR:
aamu03041
]
Complex A
U2 snRNP components
U2 related factors
139952851
Complex B
139952851
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
KH_12
KH-I_KHDC4-BBP
CdAMP_rec
Motif
Other DBs
NCBI-GeneID:
139952851
NCBI-ProteinID:
XP_071808210
LinkDB
All DBs
Position
21:11756189..11782088
Genome browser
AA seq
1231 aa
AA seq
DB search
MPLKNRHYRRRSRSTSNSSTERSSRSKKKSKNRRKSRSSSSGSSHSSASPDRSSPSNKKS
SKSSKGRSRDSRSKSKDREREKERERRREKERERERERERDRERERERERERERERERDR
ERERERERERERERNRKRRSRRSRSRSKDRRRSRSRSKDRKRSRSRSQERKKRRSRSRSK
HRGSRTQSRSPNRSNKRSDSRSKDKDAVKVEAASVEVKQEAGVRNGKGTEVGQDERSEVK
EEGDARSKVKEEKGLPLEQKRLEEEMQRRRERIERWRQERKKTVDMTAMKAEALQQAEAL
AQSTGKKWSLEDDDDVDDEADDEAEDEEMETSEPTPPVKIDPETLIKEESKNKLDEAQAK
IEEARRKMEEKIKAKELKKEQEAAAAPKEEEVDDNVDPLDAFMMSVNEEVKKINQTDRKR
TTGSEATSSVGADVQQADGQQAVKKGMVSMLTGVAVKKKVIPAPAVDKLIKGELMENDQD
AMEYSSEDEKESNLMDQVAALEQKKKKELATVDHSKIDYTPFRKDFYVEVPELAKMTPEE
ADVKRADLEGIKVRGKGCPKPIDAWVQCGVANKVLSVLKKNKYEKPTPIQAQAIPAVMSG
RDLIGIAKTGSGKTIAFLLPMFRHIMDQDPLEMNEGAISVILTPTRELAMQIYKECKKFT
KPLGLRAICVYGGTGISEQIAELKRGAEIIVCTPGRMIDMLGANNGRVTNLRRCTYLVLD
EADRMFDMGFEPQVMKIIDSIRPDRQTVLFSATFPRAMEALARRILTKPIEVTVGGRSVV
CSDIEQHVLILEEEQKFLKLLELLGIYQEQGSVLVFVERQESADLLLKDLMKASYPVLAL
HGGIDQYDRDSIIQDFKIGNVSLMVATSVAARGLDVKQLILVVNYDCPNHYEDYVHRVGR
TGRAGNKGFAFTFIMPDQQKYCGDLIKALELSEQKPPDDLMAMWTEYCDQQKAEGKKVMR
NSGFSGKGFKFDDTERELANEKKKLQKAALGLQDSDEEDAGMDIDDKIENMFASKRRVKE
VSADEISVSLPNPTLVKPVDTTNINQANLNLAKKMAERINRNLENVKQVSVVQQAAQAVM
QGNSLVAQAVSGRTIAEQLAEKLNAKLNYIPKGVDEEIVVEKEKQVFRKYEEELEINDFP
QTARWKVTSKENLAQIQEYSEAGITIRGTYFLPGKEPKEAEGERKLYLAIESSNELSVQK
AKAEITRLIREELVRLQNSYQPINKGRYKVL
NT seq
3696 nt
NT seq
+upstream
nt +downstream
nt
atgccgctcaaaaatagacactaccgaagacgctcaaggtccacttcaaactcgagtaca
gagcgttccagccgttcaaagaagaaatcgaaaaatcgtcggaagtcccgctcgagttcc
tctggttcgtcccacagctcagccagccctgaccgatcaagtccgagtaacaagaaaagc
tccaaaagcagcaaaggcagatctcgagattcacgctccaagtctaaagatcgggaacgc
gagaaagaacgagagaggcgacgggagaaggagagggaaagagagcgcgaacgagagcgt
gatcgcgagagggaacgggagcgggaacgtgaaagggaacgagaacgtgaaagagatcgc
gagagagaacgcgaaagggagcgggagagggagcgagaaaggaatcgaaaacgaagatcc
aggagatctcgttccagaagtaaagatcgtagacgttcacgctcgcgcagtaaagacaga
aagcggtctcggtcgcgaagccaagaacgtaagaaacgacgatcgcgcagccgcagcaag
caccgtggaagtcgtacgcagtcgaggagtcccaacagaagcaacaagcgttctgactcc
agaagtaaggacaaggacgctgtgaaggtcgaagcagcttcagttgaggtcaaacaggag
gccggtgtgcgaaatggaaagggtaccgaggttgggcaggatgaaaggtcagaggtcaag
gaggagggagatgcaaggtcaaaggtcaaagaagagaaaggcctgcctcttgagcaaaag
cgtttagaagaggagatgcagagaaggagagagcgcatcgagcggtggcgacaagaacgc
aagaagactgtggatatgaccgccatgaaggcagaggctctacaacaagcggaggctttg
gctcaatcgactggcaagaaatggagcttggaggatgacgatgatgtcgatgatgaggct
gatgatgaggctgaggatgaagaaatggaaacctccgagccgacacctccagtaaagatc
gaccctgaaaccctgatcaaagaagagtcaaagaacaaactcgacgaagcccaggcgaag
atcgaggaagctcgtcgcaagatggaggagaagattaaagccaaggagttgaagaaggaa
caggaggcggcagcggcacccaaagaggaggaagtggatgacaatgtggaccctctggat
gctttcatgatgagcgtcaacgaggaagtcaagaagatcaaccagaccgatagaaagagg
acgacagggagtgaagcgacgtcctcggtgggagctgatgtacagcaagctgatggacag
caagcggttaagaagggaatggtgagcatgttgactggagttgccgtcaagaagaaagtt
atacctgcacctgctgtggataaactcattaagggagaactcatggagaatgaccaggat
gctatggagtactcctctgaagacgagaaggagagtaacttaatggatcaagtagctgcc
ttagaacagaagaagaagaaagagttggccactgtggatcactccaagattgattacaca
cccttccgtaaagacttctatgttgaggtcccggagctcgccaagatgactccagaagag
gctgatgtgaagagagcagacctagaaggaatcaaagtgagaggcaaaggttgtcccaaa
cccatagacgcatgggtgcagtgtggagtagccaacaaggttctctcggtcctaaagaag
aataaatatgagaagcctacaccgatccaagcgcaggcgatcccggcggtgatgtctggt
cgcgatctcatcggcattgccaagaccggtagcggcaagaccatagcgttcctactgccg
atgttcagacacattatggatcaagatcccctggagatgaacgaaggagccatctctgtg
attttgacccctacccgagagcttgccatgcagatctacaaggaatgtaagaagtttacc
aagccgctcggactgagggctatctgtgtgtatggaggtacggggatcagtgagcagatc
gctgaactgaagaggggagctgagataattgtttgtacgccgggaaggatgattgacatg
cttggcgctaataatggtcgagtgaccaaccttcgacggtgtacgtaccttgttttagat
gaagctgatagaatgtttgacatgggctttgaaccacaggtgatgaagattattgatagt
atccgaccagatcggcagaccgttctcttctcagcaaccttccctcgagccatggaggcg
ttggctcgtcgtatcttgaccaaacccatcgaggtgaccgtggggggccgtagcgtcgtg
tgttcggacattgagcaacatgtgttgatcttagaagaggagcagaaattcctgaagttg
ttggagcttcttgggatctaccaggagcagggaagcgtcttggtgttcgtagagagacaa
gagtccgctgatttactccttaaggacctgatgaaagcttcttatcccgttctggcacta
cacggagggatcgatcagtacgatcgagactctattatacaggatttcaagattggtaat
gtgtcgttgatggttgctacttctgtcgctgcccgtggtctggacgtaaagcagctgata
ctagtcgtcaactatgactgtcctaatcactacgaagattatgtacacagagttggccgg
acgggtcgtgcgggcaataaaggttttgcattcaccttcatcatgccggatcagcagaaa
tactgcggtgatctcatcaaagcgctggagctgagcgaacagaaacctccagatgatctc
atggctatgtggactgagtactgtgaccaacagaaagctgaagggaagaaggtgatgcgt
aacagtggcttcagtgggaagggcttcaagtttgacgacactgagcgtgaattggccaat
gagaagaagaaactccagaaggccgcccttggactccaagactccgatgaagaggacgct
ggaatggatattgacgacaagattgagaacatgtttgcgtccaagcgtcgcgtcaaggag
gtatcagccgatgagatctcggtttccttgcctaatccgacattagtcaagccagtcgac
acaacgaatatcaatcaagctaatctcaacttagctaagaagatggccgagaggattaac
cgaaatctagagaatgtgaaacaagtcagcgtggtccagcaagctgcacaagccgtcatg
cagggtaactcactggttgctcaagcggtctctggtcgtacaatagcagagcagcttgct
gagaagttgaatgccaagctgaactacatccctaaaggtgtggatgaagagattgtggtc
gagaaagagaaacaagtcttcagaaagtacgaagaggaacttgagatcaatgacttccca
cagacggcgagatggaaagtcacctccaaggagaatcttgctcagatccaggagtacagc
gaggcaggaatcacaatcagagggacctacttccttcctggtaaagaacccaaggaggct
gagggagagaggaaactctatctagctatcgagagttcaaatgaactttcagtgcagaag
gcaaaagctgaaattactagactcatcagggaagagcttgttagactgcaaaattcttac
caaccaatcaacaagggacgttacaaagtcttatga
DBGET
integrated database retrieval system
