Anoxybacteroides amylolyticum: GFC30_1572
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Entry
GFC30_1572 CDS
T04397
Symbol
rnjB
Name
(GenBank) ribonuclease J 2
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
aamy
Anoxybacteroides amylolyticum
Pathway
aamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFC30_1572 (rnjB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamy03019
]
GFC30_1572 (rnjB)
Messenger RNA biogenesis [BR:
aamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFC30_1572 (rnjB)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B
Lactamase_B_2
Lactamase_B_6
Mur_ligase_C
P8
eIF-1a
Motif
Other DBs
NCBI-ProteinID:
ANB61164
UniProt:
A0A167TKD3
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All DBs
Position
1507449..1509104
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AA seq
551 aa
AA seq
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MKQVERIRVFSLGGVGEIGKNMYVIELDDDIFVIDAGVMFPEDEMLGIDKVIPDITYLVE
KKERVKAIFLTHGHEEHIGAIAYVLQKITAPVYGTKLTLGLAQEKLKEHDTTTTAPFIDV
HSDSEVVFEKATVTFFRTIHSIPDSIGISFRTSQGAIVYTGDFKFDQTPYGMNRADLGKM
AQIGEQGVLCLLSDSTNAEKIGYTGSDATVAQAISDVVYNANGRVIAACYASNITRIQQV
LHAAKMHGRKVAIVGKSMHKVMDVAVRLGYLQLPEETVISIQDIQRYRDEELVILTTGGH
GEPMGALARMAKQAHKQVNIIEGDTVIVAASPMPGHELLFLKTIDALYRAGANVVYKNVH
VSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHAALAKAVGVAEERTFLVDKGDVIEF
RSGQARFGGKVPYGNVLIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLSKEAKKIVAGP
EIISRGFVYVRESETLLEEATKLVTTIVNKCMQEYVIEWSSLKSNIRDALSQYLFEKTKR
KPMILPIIMEV
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
ttgaaacaagtagagagaatacgagtgttttccctcggtggagtaggggaaatcggaaaa
aacatgtatgttattgagctagacgacgatatttttgtcattgatgcaggagtgatgttt
ccggaagacgagatgctcggtatcgacaaagtcattccagatattacgtatcttgtggaa
aaaaaagagcgtgtgaaggcgatttttttaacgcacggacatgaagagcatatcggtgcg
attgcgtatgtattacagaaaattaccgcccctgtctatggaacaaagttgacgcttggc
ttggcgcaagaaaagctaaaagagcatgacacgacgacaacagcgccatttatcgacgtt
cattctgattctgaagtggtgtttgaaaaagcaacggtgacgtttttccggacgattcat
agcatccctgattccatcggaattagttttcgcacatcgcaaggcgctatcgtttatacg
ggcgattttaaatttgaccaaacgccttacgggatgaatcgagctgatttaggaaaaatg
gcgcaaatcggcgaacaaggggtactatgcttattatccgatagtacgaacgcggaaaaa
atagggtatactggctcggatgcgacggttgcccaagcgatttccgatgttgtatataac
gccaatggcagggtgatagctgcttgttatgcctccaatattacacgaattcagcaagta
ttgcatgcggcgaaaatgcacggacgaaaagtagcaatcgtcggaaaaagcatgcataaa
gtgatggatgttgccgttcgcctaggctatttacaactaccagaagaaacggttatctcc
atccaagatatccagcgataccgcgatgaagagctagtcattctaacgaccggcggtcac
ggagagccgatgggggcacttgcgcggatggccaaacaggcgcataaacaagtgaacatt
atagaaggagatacggttattgtggcagcttcgccaatgcctggtcatgaattgttgttt
ttaaaaacgattgatgcactataccgagcaggggcaaatgttgtctataaaaatgtgcat
gtatccggacatggatgtcaagaagaactgaaattgatgcttaatttaatgaaaccgaaa
tattttatccctgttcacggagaataccgtatgcaaaaagcgcatgccgcgttagcaaaa
gcagttggcgttgctgaagagcggacgtttttagtagataaaggcgatgtgattgaattt
cggagcggacaggcgcgttttggtggcaaagtgccgtacgggaacgtattaattgacggg
ctagggatcggagatgtcggcaatatcgtcttgcgcgaccgccgcttgctttcacaagac
ggaatattaattgttgtcgtcacgttaagtaaagaagcgaaaaaaattgtcgccggccca
gaaattatttctcgaggatttgtatacgtacgggaatcggaaacgttgcttgaggaagcg
acaaagctagtgacgacaatcgtcaataaatgtatgcaagagtatgttattgaatggtct
tcattaaaatctaatattcgtgatgcgttaagccaatatttatttgaaaaaacgaaacga
aaaccgatgattttgccaatcattatggaagtttaa
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