KEGG   Anoxybacteroides amylolyticum: GFC30_1572
Entry
GFC30_1572        CDS       T04397                                 
Symbol
rnjB
Name
(GenBank) ribonuclease J 2
  KO
K12574  ribonuclease J [EC:3.1.-.-]
Organism
aamy  Anoxybacteroides amylolyticum
Pathway
aamy03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aamy00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    GFC30_1572 (rnjB)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aamy03019]
    GFC30_1572 (rnjB)
Messenger RNA biogenesis [BR:aamy03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Ribonucreases
     GFC30_1572 (rnjB)
SSDB
Motif
Pfam: RNase_J_b_CASP RNase_J_C RMMBL Lactamase_B Lactamase_B_2 Lactamase_B_6 Mur_ligase_C P8 eIF-1a
Other DBs
NCBI-ProteinID: ANB61164
UniProt: A0A167TKD3
LinkDB
Position
1507449..1509104
AA seq 551 aa
MKQVERIRVFSLGGVGEIGKNMYVIELDDDIFVIDAGVMFPEDEMLGIDKVIPDITYLVE
KKERVKAIFLTHGHEEHIGAIAYVLQKITAPVYGTKLTLGLAQEKLKEHDTTTTAPFIDV
HSDSEVVFEKATVTFFRTIHSIPDSIGISFRTSQGAIVYTGDFKFDQTPYGMNRADLGKM
AQIGEQGVLCLLSDSTNAEKIGYTGSDATVAQAISDVVYNANGRVIAACYASNITRIQQV
LHAAKMHGRKVAIVGKSMHKVMDVAVRLGYLQLPEETVISIQDIQRYRDEELVILTTGGH
GEPMGALARMAKQAHKQVNIIEGDTVIVAASPMPGHELLFLKTIDALYRAGANVVYKNVH
VSGHGCQEELKLMLNLMKPKYFIPVHGEYRMQKAHAALAKAVGVAEERTFLVDKGDVIEF
RSGQARFGGKVPYGNVLIDGLGIGDVGNIVLRDRRLLSQDGILIVVVTLSKEAKKIVAGP
EIISRGFVYVRESETLLEEATKLVTTIVNKCMQEYVIEWSSLKSNIRDALSQYLFEKTKR
KPMILPIIMEV
NT seq 1656 nt   +upstreamnt  +downstreamnt
ttgaaacaagtagagagaatacgagtgttttccctcggtggagtaggggaaatcggaaaa
aacatgtatgttattgagctagacgacgatatttttgtcattgatgcaggagtgatgttt
ccggaagacgagatgctcggtatcgacaaagtcattccagatattacgtatcttgtggaa
aaaaaagagcgtgtgaaggcgatttttttaacgcacggacatgaagagcatatcggtgcg
attgcgtatgtattacagaaaattaccgcccctgtctatggaacaaagttgacgcttggc
ttggcgcaagaaaagctaaaagagcatgacacgacgacaacagcgccatttatcgacgtt
cattctgattctgaagtggtgtttgaaaaagcaacggtgacgtttttccggacgattcat
agcatccctgattccatcggaattagttttcgcacatcgcaaggcgctatcgtttatacg
ggcgattttaaatttgaccaaacgccttacgggatgaatcgagctgatttaggaaaaatg
gcgcaaatcggcgaacaaggggtactatgcttattatccgatagtacgaacgcggaaaaa
atagggtatactggctcggatgcgacggttgcccaagcgatttccgatgttgtatataac
gccaatggcagggtgatagctgcttgttatgcctccaatattacacgaattcagcaagta
ttgcatgcggcgaaaatgcacggacgaaaagtagcaatcgtcggaaaaagcatgcataaa
gtgatggatgttgccgttcgcctaggctatttacaactaccagaagaaacggttatctcc
atccaagatatccagcgataccgcgatgaagagctagtcattctaacgaccggcggtcac
ggagagccgatgggggcacttgcgcggatggccaaacaggcgcataaacaagtgaacatt
atagaaggagatacggttattgtggcagcttcgccaatgcctggtcatgaattgttgttt
ttaaaaacgattgatgcactataccgagcaggggcaaatgttgtctataaaaatgtgcat
gtatccggacatggatgtcaagaagaactgaaattgatgcttaatttaatgaaaccgaaa
tattttatccctgttcacggagaataccgtatgcaaaaagcgcatgccgcgttagcaaaa
gcagttggcgttgctgaagagcggacgtttttagtagataaaggcgatgtgattgaattt
cggagcggacaggcgcgttttggtggcaaagtgccgtacgggaacgtattaattgacggg
ctagggatcggagatgtcggcaatatcgtcttgcgcgaccgccgcttgctttcacaagac
ggaatattaattgttgtcgtcacgttaagtaaagaagcgaaaaaaattgtcgccggccca
gaaattatttctcgaggatttgtatacgtacgggaatcggaaacgttgcttgaggaagcg
acaaagctagtgacgacaatcgtcaataaatgtatgcaagagtatgttattgaatggtct
tcattaaaatctaatattcgtgatgcgttaagccaatatttatttgaaaaaacgaaacga
aaaccgatgattttgccaatcattatggaagtttaa

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