Anoxybacteroides amylolyticum: GFC30_587
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Entry
GFC30_587 CDS
T04397
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aamy
Anoxybacteroides amylolyticum
Pathway
aamy03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aamy00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GFC30_587 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aamy03019
]
GFC30_587 (rnr)
03016 Transfer RNA biogenesis [BR:
aamy03016
]
GFC30_587 (rnr)
Enzymes [BR:
aamy01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
GFC30_587 (rnr)
Messenger RNA biogenesis [BR:
aamy03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
GFC30_587 (rnr)
Transfer RNA biogenesis [BR:
aamy03016
]
Prokaryotic type
tRNA degradation factors
GFC30_587 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
S1CSD-TOTE-2
S1_RRP5
OB_Dis3
OB_RNR_1st
Motif
Other DBs
NCBI-ProteinID:
ANB59832
UniProt:
A0A160F2A7
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All DBs
Position
578857..581136
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AA seq
759 aa
AA seq
DB search
MKEKLLAFMRDEAYKPLTVQELEEAFHITEAAEFKELVKTLVALEEEGLIIRTRSNRYGL
PEKMNLIRGKVTGHAKGFAFVVPEDPTLDDIFIPPSELKNAMHGDTVLVRVNAHPTGARK
EGTIVRIIERGVTEIVGTYTESKNFGFVIPDDKKIVNDIFIPKHAANGAVEGHKVVVRLT
TYPEGRISAEGEVIKILGHKNDPGVDILSIIHKHGLPLQFPEDVIAHANSIPDTISEEDL
EGRRDLRNEMIVTIDGEDAKDLDDAVTVTKLENGHYKLGVHIADVSHYVTEGSPIDREAY
ERGTSVYLVDRVIPMIPHRLSNGICSLNPKVDRLTLSCEMEINDRGEVVHHEIFQSVIRT
TERMTYSDVNRILVDKDEALREKYAPLVPMFEIMAELADILRNKRMKRGAIDFDFKEAKV
LVDENGKPYDVVLRERSVAERLIEEFMLAANETIAEHFHWMNVPFIYRVHEDPKPEKLQR
FLEFITNFGYIVKGTGNQIHPRALQEVLEAVRGEPEEMVVSTVMLRSMKQARYDAESLGH
YGLSTEFYTHFTSPIRRYPDLIVHRLIRTYLINGQIDEQTQQKWAEKLPEIAEHTSNMER
RAVEAERETDDLKKTEFMEDKIGMEFDGIISSVTNFGLFVELPNTVEGLVHVSYLTDDYY
HYDEQHYAMIGERTGKVYRIGDEITVRVINVNKEERIVDFEIVGMKGRRNQKAKASPVVI
EGKRKKKKSDEKWPTKKEKKKPKFYEDIPKMKKKKKKKR
NT seq
2280 nt
NT seq
+upstream
nt +downstream
nt
atgaaagaaaaattattagcctttatgcgcgatgaagcgtataaaccactcactgttcag
gaactggaagaagcgttccacattacggaagcagccgaatttaaagagcttgtcaaaacg
ctcgttgcgcttgaagaagaaggattgattatccgcacaagaagtaaccggtacggattg
ccagaaaaaatgaacttaattcgcggcaaagtgacagggcatgcgaaagggttcgcattt
gttgtgccagaagacccgacgcttgatgatattttcattccgccatcggaattaaaaaat
gcgatgcatggcgatacggtgcttgtacgtgttaatgcacacccgacaggcgctcgtaaa
gaaggaacgatcgtccgcattattgagcgcggcgtaacggaaatcgtcggaacgtataca
gaaagcaaaaacttcggcttcgtcattccggacgacaaaaaaatcgtcaacgatattttt
attccgaaacatgcggcaaatggcgcagtcgaagggcacaaagtcgttgtccgcttaacg
acgtatccagaaggacgcattagcgcagaaggggaagttattaaaattctcggccataaa
aacgatccgggcgtcgatattttatcgatcattcataagcacggcttgccgctacaattt
ccggaagacgtcatcgcccacgccaacagcattcccgatacgatttccgaagaagattta
gaagggcgtcgcgatttgcgcaatgagatgattgtcacgatcgacggggaagacgcgaaa
gatttagacgacgcggtgacggtgacgaagctcgagaatggacattataaacttggcgtc
catattgccgacgtcagtcattatgtcacggaaggatcaccgattgatcgggaagcatat
gagcgtggaacgagcgtttatttagtagatcgcgtcattccgatgattccgcaccgttta
tccaatggcatttgctcgctcaacccgaaagtggatcgcctaacgttatcgtgcgagatg
gaaattaacgaccgtggcgaagtcgtccaccatgaaatttttcaaagcgtcattcgcacg
acagagagaatgacgtattccgatgtgaaccgcattctcgtcgataaagacgaggcgctt
cgagaaaagtatgctccgcttgtgccgatgtttgagataatggcagagttggcggatatt
ttacgaaacaagcgcatgaagcgcggggcgattgattttgattttaaagaggcaaaagtg
ctcgtcgatgaaaatggcaagccgtacgacgtcgtgttgcgtgaacgttcggttgcggag
cgattaatcgaagaatttatgttagcagcgaacgaaacgattgctgaacatttccattgg
atgaatgttccgtttatttatcgtgtgcatgaagatccgaaacctgaaaaattgcagcgc
tttttagagtttattacgaatttcggttatattgttaaaggaacaggaaaccaaattcat
ccgcgcgcgttgcaagaagttctagaagcagtgcgtggtgagccggaagaaatggtcgtt
tcgaccgtcatgcttcggtcgatgaaacaagcgcgttatgatgcagaaagcctcggtcac
tatggattatcaaccgaattttatacgcatttcacgtcaccgattcgtcgctacccagac
ttaatcgttcatcgccttattcgcacctatttaattaacggacaaatcgatgaacaaacg
caacaaaaatgggcggagaagcttccggaaattgcggagcatacgtcgaatatggagcgg
cgtgcggtagaggcagagcgtgaaaccgacgacttgaagaagacggagtttatggaagat
aaaatcggcatggaatttgacggcattattagctcggtgacgaattttggtttgtttgtc
gagctgccgaacacggtggaagggcttgtgcacgtcagctatttaacagacgattactat
cattacgacgagcaacattatgcgatgattggggagcgaacggggaaagtatatcgcatc
ggcgacgaaattacggtgcgtgtcattaacgtgaataaagaggagcgcatcgtcgacttt
gaaattgtcggcatgaaaggacggcgcaatcaaaaagcaaaagcctcgccagtcgttatt
gaaggaaagcggaaaaagaaaaaaagcgacgaaaaatggccgacgaaaaaggaaaagaaa
aagccgaagttttatgaagacattccaaaaatgaaaaagaagaaaaagaaaaaacgataa
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