Aggregatibacter actinomycetemcomitans D7S-1: D7S_00682
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Entry
D7S_00682 CDS
T02046
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
aan
Aggregatibacter actinomycetemcomitans D7S-1
Pathway
aan03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aan00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
D7S_00682
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aan03019
]
D7S_00682
03009 Ribosome biogenesis [BR:
aan03009
]
D7S_00682
Enzymes [BR:
aan01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
D7S_00682
Messenger RNA biogenesis [BR:
aan03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
D7S_00682
Ribosome biogenesis [BR:
aan03009
]
Prokaryotic type
rRNA processing factors
D7S_00682
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
PNPase_C
S1
AGK_C
Motif
Other DBs
NCBI-ProteinID:
AFI86503
LinkDB
All DBs
Position
complement(661597..664488)
Genome browser
AA seq
963 aa
AA seq
DB search
MKRMLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDY
GAERHGFLPLKEIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFV
SLAGSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEEL
QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKA
KAHIKLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTA
IDINSARSTRGGDIEETALSTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVEN
RVRDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSL
SILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHTVDILVVPNEAMETP
HFSVFRVRDGEEVNELSYNLARLHQGQDETLVAEESLISRNIDTTPAETPVVESAAVSLS
IPMPAPEPVERKEQSGPSLLIRLLAALKGLFASEPKQEEQNKKTRNNNRNSNNNRNRRNQ
ERRNNRRNRNDNAENVVEEQTAEKAERVESRNRNQERNAKRNRKPEVIEEVINSKASTPV
SEERVEPTQRRQRRDLRKKVRLNEEEMNEVPPSKSTVAQFAENTVVEPKAEEEIVVTDVI
DLDDNAEVDKGRDNSRQRRLPRHLRVNNQRRRRNTQEKSPMPLFAAVASPELASGKVWID
MGQSVQSKENSFLSVDELLEQQNQSDAGEPDQSITVTVPALDMIVEKSKNDVQPLTEFII
QPANDSVKKKVQASLQRLNNNVVSAPMEATAEVIVTMDVSDDVKFMDETDRTYVFNGRLG
TFSAVTHTKAEATLAKPSDTPITTYPVQEWQESRYYFYGKGAAGHHTAISHIYTEPTKAE
AVK
NT seq
2892 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgttgatcaatgcgactcaaaaagaagagttgcgcgttgcgttagtcgat
gggcaacgcttattcgacctggacattgagagtctggggcatgaacagaaaaaagccaat
atttacaagggaaaaattactcgggttgaaccgagtttggaagccgcttttgtggattac
ggtgcagaacgtcacggttttttaccgttgaaggaaattgcacgtgaatattttccgtcg
ggttatgtatatcaaggccgcccgaatattcgcgatattatctcggaaggacaggaagtc
attgttcaggtcaacaaagaagagcgtggtaacaaaggtgcggcgctgaccacctttgtt
tccttggcagggagttatttggtgattatgccgaataatccgcgcgccggcgggatttcc
cgtcgtattgaaggcgatgagcgtttggagttaaaagatgcgttgagttctttggatgtg
cctgaaggcgtgggattaatcgtacgcaccgcgggcgtgggaaaatccccggaagaattg
caatgggacttgaaagtgctgttgcatcattgggaagccattaaacaagcgtctcaaagc
cgcccggcgccttttttaattcatcaggaaagtgatgttatcgtgcgtgccattcgcgat
tatttgcgtcgcgatattggtgaaatcctgattgatagcctgcaagtttatgaaaaagcc
aaggcgcacattaaattggttcgtccggatttcattaatcgagtgaaattataccaaggt
gaagtgccgttatttagccattatcaaattgagtcgcaaatcgaatcggcattccaacgt
gaagtgcggttgccttccggcggttctattgttattgatgtgaccgaagccttaacagcc
attgatattaactccgcccgttccacccgtggtggcgacattgaagaaaccgcgttaagc
accaaccttgaagctgccgatgaaatcgcccgtcaattgcgtttgcgcgacttgggcggt
ttaatcgtgattgactttattgatatgacgccggttcgtcatcagcgtgaagtggaaaat
cgggttcgtgatgcggtgcgccaggatcgggcgcgtattcaaattagccgaatttcccgt
ttcgggttgttggaaatgtcccgtcagcgtttgagtccgtcattaggcgaatcctctcac
cacgtttgcccgcgctgccaaggcaccggcaaaatccgtgataacgagtcactttccctt
tccattttgcgtttattggaagaagaagcgttaaaagaaaataccaaacaggttcacacc
atcgttccggtacaaatcgcgtcttacttactcaatgaaaaacggaaagccattcatagc
atcgaaaaacgccacactgtggatattctcgtggtgccgaatgaagctatggaaacaccg
cactttagtgtgttccgtgtgcgtgatggggaagaggttaatgaattaagttataactta
gccagattacatcaggggcaagatgagacccttgtagctgaagaatccctgatttcccgt
aacattgacaccacacctgcggaaacgccggtggtggaaagtgcggcggtttctttatcc
attccaatgccggcaccggaacctgttgagcgtaaagaacaaagcggtccgtctttgttg
atccgtttattggcggcgttaaaaggcttatttgcttccgaaccgaaacaggaagagcaa
aataagaaaacgcgtaataacaatagaaacagtaacaataatcgcaatcgacgtaaccag
gaacgtcgtaataatcgccgtaaccgtaatgacaatgcggaaaatgtggttgaagagcaa
actgcagaaaaggctgagagagttgaaagcagaaatcgcaatcaagagcgtaatgccaaa
cgtaatcgcaaacctgaagtaattgaagaggtgattaactctaaggcttccacaccggtt
agcgaagaaagggtagaaccgacacaacgtcgtcaacgtcgtgatttgcgcaaaaaagtg
cgtcttaatgaagaggaaatgaatgaggttccgccttctaaatcgacagtagcacaattt
gcagaaaacaccgttgttgagccaaaagcggaagaagagattgtagtaacggacgtgatt
gatcttgatgataatgctgaagtcgataaagggcgcgataattcacgtcaacgtcgtttg
ccacgtcatttgcgcgtcaataatcagcgccgtcgtcgcaatacgcaagaaaaatcgccg
atgccattatttgcggcagtggcttcaccggaattagcgagcggtaaagtgtggatcgac
atggggcagtccgttcaatcaaaagaaaatagcttcttatctgttgatgaacttcttgag
caacaaaatcaatctgatgcaggcgaaccggatcaaagtatcactgtcactgtgccggcg
ttggatatgattgttgaaaaaagtaaaaatgatgttcagccattaacggaatttattatc
caaccggcaaatgattccgttaagaaaaaagtacaggcatcgttacaacgcttaaataac
aatgtggtatccgctccaatggaagcgacagctgaagtgattgtaacgatggatgtctcc
gatgatgtgaaattcatggatgaaactgaccgcacttatgtttttaacggacgtctaggg
acattctcggcagtgacccacactaaagcagaagcgactttggcgaagccttccgataca
ccgattacgacttatccggtgcaagaatggcaggaatcccgttattatttctacggtaaa
ggcgcggcagggcaccacaccgcaatcagccatatttacaccgaaccgactaaagcggaa
gcggtgaaataa
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