Halarcobacter anaerophilus: AANAER_2485
Help
Entry
AANAER_2485 CDS
T06853
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase, beta' subunit
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aana
Halarcobacter anaerophilus
Pathway
aana03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aana00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
AANAER_2485 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aana03021
]
AANAER_2485 (rpoC)
03400 DNA repair and recombination proteins [BR:
aana03400
]
AANAER_2485 (rpoC)
Enzymes [BR:
aana01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
AANAER_2485 (rpoC)
Transcription machinery [BR:
aana03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
AANAER_2485 (rpoC)
DNA repair and recombination proteins [BR:
aana03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
AANAER_2485 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Apocytochr_F_C
zf-A20
Motif
Other DBs
NCBI-ProteinID:
QDF29941
LinkDB
All DBs
Position
complement(2478069..2482601)
Genome browser
AA seq
1510 aa
AA seq
DB search
MSNNEKILEPIEVKELERPKDFSAFQLRLASPEKILSWSSGEVKKPETINYRTLKPERDG
LFCAKIFGPVKDYECLCGKYKKMRYKGVVCEKCGVEVTSSKVRRHRMGHIDLVSPVAHIW
MVSSLPTRIGTLLGVKLKDLERVLYYEAYIVAEPGEAYYDNEKTKKVNKYDILNEEQFRT
ISDLFDHTGFEANMGGQVIRDLLETLDLIELLNTLKEDMAGTKSEAKRKTIVKRLKVVEN
FINSGNRPEWMMLTKLPVLPPDLRPLVALDGGKFAVSDVNDLYRRVINRNNRLKRLTELD
APEIIIRNEKRMLQEAVDALFDNGKTANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKR
VDFSGRSVIVVGPSLNMDQCGIPKKMALELFKPHLMAKLEEKGYATTLKSAKRLIESQTN
EVWECLSEIVDEYPILLNRAPTLHKLSIQAFHPTLIDGKAIQLHPLVCAAFNADFDGDQM
AVHVPLSQEAIAEAKILMMSSMNILLPASGRAIAVPSQDMILGIYYLSLEKEGVKGQHKL
FADVNEAKIALEMGKVDLHAKIRTKIDDKVIHTTIGRLIVHEILPDFVPVELWNKILKKK
DIGALVDYIYKHGGYEVTPKFLDNLKNLGFRYATDAGVSVSIDDIRVPPSKVEHIAKSKK
EVIEVQRQFSQGLLTEQERYNKIIDIWTEVNNTLGTEMMDLVKSDKDGFNSIYMMADSGA
RGSAAQIRQLSGMRGLMAKPDGSIIETPIISNFREGLNVLEYFISTHGARKGLADTALKT
ANAGYLTRKLIDVSQNVRITMEDCGTHEGIQITDISSGNELIESLEERITGRVIAEDIID
PISNEILFTEGTLITEEDAKVVAEAEVKSVVIRTPLTCKAKNGLCSKCYGLNLGEQRKAK
PGEAVGVVAAQSIGEPGTQLTLRTFHVGGTASATQTERELRADKEGFIRYYNIKTHTDVE
DRKVVANRRNAGILLVEPKINAPFKGNVTVETVHEEVILTITNGKEEKKYYLRKNDVAKA
NELAGVSGKVEGKLYLPHKDGIEVDENDSIVEMIRDGWNVPNRIPYASLLRVQDGAPITT
TIVSGAIGTVKYYKLHGDYLERKDDIKKGERVEEKGLFSVIVDGDGREALRHYISRGSVV
NLDDNTPVEKDSVIALPASDEQVVIAEWDPYSNPTIAEKAGKIAFEDIIPGVTVAEQFDE
LTGTSKLVVNEYIPAGYKPSIVVATDKKELIKYALEPKTSLFVNEGQEVQVADILGKTPK
ATQKSKDITGGLPRVSELFEARRPKNIAVLASFDGMVTFGKPLRNKQRIIITDENGNKGE
FLVEKSKQILVREGEFVHAGEALTDGQVSPHDILRILGEKALHYFIVSEVQQVYRSQGVN
IADKHIEVITSQMLRQVSIVDGGDTKFIIGDMVSKKRFMQENEKIVKLGGKPAIAEPLLL
GITRAAVTSDSIISAASFQETTKVLTEAAISAKMDMLEDLKENVVIGRTIPVGTGLYKDK
KVKFEDYEEN
NT seq
4533 nt
NT seq
+upstream
nt +downstream
nt
atgagtaataacgaaaaaattttagagccaattgaagtaaaagaactagaaagaccaaaa
gacttttcagcttttcaattaagattagcaagtcctgaaaagatcctttcttggtcttca
ggagaggtaaagaaacctgaaacaattaattatagaacattaaaacctgaaagagacggt
cttttttgtgccaaaatttttggacctgtaaaagattatgagtgtctttgcggtaaatat
aaaaaaatgagatacaaaggtgttgtatgtgaaaaatgtggtgttgaagtaacatcaagt
aaagtaagacgacacagaatgggacacattgatttagtttctcctgttgctcatatttgg
atggtaagctcacttcctactagaataggaactctacttggagttaaactaaaagatttg
gaaagagttttatattatgaagcatacattgttgcagaaccaggtgaagcttattatgat
aatgaaaaaacaaaaaaagttaataaatacgatattttaaatgaagaacaatttagaaca
atttctgatttgtttgaccatacaggatttgaagcaaatatgggtggacaagtaattaga
gatttacttgagactctagatttaattgaacttcttaatactctaaaagaggatatggca
gggactaaatctgaagcaaaaagaaaaacaatcgtaaaaagactaaaagttgttgaaaac
tttatcaattctggaaacagaccagaatggatgatgcttacaaaacttcctgttcttcca
cctgatttaagacctcttgttgctcttgacggtggtaaatttgccgtttctgacgtaaat
gacctttatagaagagttataaacagaaataacagacttaaaagattaacagaacttgat
gcacctgagattattatcagaaatgaaaaaagaatgcttcaagaagctgttgatgcgttg
tttgacaacggtaaaacagcaaatgcggtaaaaggtgcaaacaaaagacctcttaaatca
ttatctgaaattattaaaggtaaacaaggacgatttagacaaaacctattaggaaaaagg
gttgacttctcaggaagatctgtaatcgttgttggtcctagtttaaatatggatcaatgc
ggtattcctaaaaaaatggctctagagttgtttaaaccgcatttaatggcaaaattagaa
gaaaaaggttatgcaactacacttaaatcggctaaaagattgattgaatctcaaacaaat
gaagtttgggaatgtttatctgaaattgttgatgagtacccaattttacttaacagggct
ccgacacttcataaactttcaattcaagcgtttcacccgacacttattgacggtaaagct
attcagcttcacccattagtttgtgctgcatttaatgccgactttgacggtgaccaaatg
gctgttcacgttcctttatcgcaagaagctattgctgaagcaaaaattcttatgatgagt
tctatgaatattcttttaccggcttcaggacgtgctattgcagttccatctcaagatatg
attttgggtatttattatctatcattggaaaaagagggtgtaaaaggtcaacataaacta
tttgcagatgtaaatgaagcaaaaattgcacttgaaatgggaaaagttgatcttcatgca
aaaatcagaacaaaaatagatgataaagttattcatacaactataggtagattgattgtt
catgaaatcttacctgatttcgttcctgttgaattatggaataaaatcttaaagaaaaaa
gatatcggtgccttagttgattatatctataaacacggtggatatgaagtaactccaaaa
ttcttagacaatcttaaaaacttaggttttagatatgcaacagatgcaggggtatcggta
tctatcgatgatattagagttccgccttcaaaagttgaacatattgctaaatctaaaaaa
gaggttattgaagttcaaagacagttctctcaagggttgttaactgagcaagaaagatat
aataaaatcattgatatctggactgaggttaataatactttgggtactgagatgatggat
cttgtaaaatcagataaagacggatttaactcaatttatatgatggctgactcgggagct
aggggttctgctgctcaaattagacaattgtctggtatgaggggacttatggctaaacct
gacggttcaattattgaaacacctattatttctaactttagggaaggtctaaacgtactt
gagtactttatttctactcacggtgctagaaaaggtcttgccgatactgcacttaaaaca
gcaaatgcagggtatttgacaagaaaacttattgatgtttcacaaaatgttagaatcaca
atggaagattgcggtactcacgaaggtatccaaattacggatattagttcaggtaatgaa
ttaattgagtctttagaagaaagaatcacaggtagagtaatcgctgaagatattattgat
ccaatttcaaatgagattttatttacagaaggaactttaataacagaagaagatgcaaaa
gttgttgcagaagctgaagtaaaatcggtagttattagaactccacttacttgtaaagct
aaaaacggtctttgctctaaatgttacgggttaaaccttggagagcaaagaaaagcaaaa
cctggtgaagcagtcggggttgtagcagcacaatcaatcggggaaccaggaacacagctt
acacttagaactttccacgttgggggtactgcaagtgctactcaaacagaaagagagtta
agagcagataaagaaggttttatcagatactacaatatcaaaactcatacagatgttgag
gatagaaaagtagtagcaaacagaagaaatgcaggtattttattggttgagcctaaaatc
aatgcaccttttaaaggtaatgtaactgttgaaactgttcacgaagaagtaattttaact
attacaaacggtaaagaagagaaaaaatattaccttagaaaaaatgatgttgcaaaagca
aatgaacttgcgggtgtttcaggaaaagttgaaggtaaactttatttacctcacaaagac
ggtatagaagttgatgaaaatgattcaatcgttgaaatgattagagatggatggaatgtt
ccaaacagaatcccttatgcatctttattaagagttcaagacggggcacctattacaaca
actatagtttcaggagcaatcggtacggttaaatactacaaacttcacggtgattatctg
gaaagaaaagatgatatcaaaaaaggtgaaagagtagaagaaaaaggtcttttctctgta
attgtagacggtgacggcagagaagcgttaagacactatatttcaagaggttcggtagtt
aacttagatgataacactcctgttgaaaaagatagcgtaattgcattacctgcaagtgac
gaacaagtagtaatcgctgaatgggatccatactcaaatccaacaattgccgaaaaagcc
ggtaaaattgcatttgaagatattattccaggtgttactgttgcagaacaatttgatgaa
ttaacaggtacgtcaaaacttgttgtaaacgagtatattcctgctggatataaaccttct
attgtagttgctacagataaaaaagagttgataaaatatgctttagagcctaaaacatcg
ctttttgtaaatgaaggacaagaggttcaagttgcggatattttaggtaaaacaccaaaa
gctactcaaaaatcaaaagacattacagggggtcttccaagagtatctgagttatttgaa
gcaagaagacctaaaaatattgcagttcttgcatcatttgacggaatggtaacatttggt
aaacctttaagaaacaaacaaagaattattattactgatgaaaacggtaataaaggtgaa
ttcttggttgaaaaatctaaacaaatccttgtaagagaaggggagtttgtacatgcaggt
gaggctttaacagacggtcaagtttctcctcatgatattcttagaattttaggtgaaaaa
gcgttgcattactttattgtatcagaagtacaacaagtatatagatctcaaggggttaat
atcgccgataaacatattgaggttattacatctcaaatgttaagacaggtatctatcgta
gatggtggagatactaagtttattataggtgatatggtatctaaaaaaagatttatgcaa
gagaatgaaaaaatcgttaaacttggcggtaaacctgctattgcagagcctttattactt
ggtattacaagagctgctgttacatcagattctattatctctgctgcatctttccaagaa
acgacaaaagttctaactgaagctgcaattagtgcaaaaatggatatgttagaagactta
aaagagaatgttgttattggtagaacaattcctgtaggaactggtctatacaaagacaaa
aaagttaaatttgaagattacgaagagaattaa
DBGET
integrated database retrieval system
