Anguilla anguilla (European eel): 118207371
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Entry
118207371 CDS
T07545
Symbol
pabpc1l
Name
(RefSeq) polyadenylate-binding protein 1-like isoform X1
KO
K13126
polyadenylate-binding protein
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03015
mRNA surveillance pathway
aang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118207371 (pabpc1l)
09123 Folding, sorting and degradation
03018 RNA degradation
118207371 (pabpc1l)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aang03019
]
118207371 (pabpc1l)
03041 Spliceosome [BR:
aang03041
]
118207371 (pabpc1l)
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
118207371 (pabpc1l)
mRNA cycle factors
Stress granule specific factors
118207371 (pabpc1l)
Spliceosome [BR:
aang03041
]
Complex C
Other components
Complex C specific factors
118207371 (pabpc1l)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_10
RRM_occluded
RRM_3
RBD_RDR6
ApbA_C
Motif
Other DBs
NCBI-GeneID:
118207371
NCBI-ProteinID:
XP_035236755
LinkDB
All DBs
Position
11:1690104..1699527
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AA seq
656 aa
AA seq
DB search
MNSSGPAYPLASLYVGDLHPDVTEAMLYQKFSPAGPIMSIRVCRDIITRRSLGYAYINFQ
QPADAECALDTMNYEVIKGRPIRIMWSQRDPGLRKSGVGNIFIKNMDESIDNKALYDTFS
AFGNILSCKVVCDENGSKGYGFVHFETQEAANRAIDTMNGMLLNDRKVLETGRQVECDLS
QSQPVPCILGESCVMSTCSFVGHFKSRKEREAEFGAKAMEFTNVYIKNFGEDFDDEKLKE
IFSEFGRTLSVRVMMDERGRSRGFGFVNYENHEDAQKAVEQMNGKELNGRILYVGRAQKR
LERQGELKRKFEQIKQERIHRYQGVNLYVKNLDDGIDDERLRREFAPYGTITSAKVMTDV
GHSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERKAILTNQYMQRLASV
RALPAPVIGSYQQPSGYFMSTVPQPQSRTFYPPNTVPPIRPGPRWTTQPPRPQGPYSAQF
VRSAVPRRASTPISSVRQASTQAPRVMSNTQKMANIGTQTAGGRAAMPGPPVRGVNQYKY
STGVRNMQQVITMPTQVTVQQVSEPAVLVRGQEPLTASMLAAAPLMEQKQLLGERLYPLI
QALHPSLAGKITGMLLEIDNSELLHMLEARESLHSKVDEAVAVLQAHQAKELSPKN
NT seq
1971 nt
NT seq
+upstream
nt +downstream
nt
atgaacagtagcggccccgcctacccgctggcctcgctgtacgtcggggacttgcaccct
gacgtcaccgaggccatgctgtaccagaagttctccccagccggcccaatcatgtccatc
cgcgtttgccgtgacatcatcacgcggaggtcgctgggatacgcctacatcaatttccag
cagcctgctgacgcggaatgtgccttggacacaatgaactatgaggtcatcaagggtcga
ccaatcaggataatgtggtcccagcgtgaccccggactgaggaagtctggggttggaaac
atcttcataaagaacatggacgagtccattgataacaaggccttgtacgacaccttttcc
gccttcggaaacatcctgtcctgcaaggtggtgtgtgatgagaacggctccaagggctac
gggtttgtccacttcgagacccaggaggcagccaaccgagccatagacaccatgaacggc
atgctgctgaacgaccgcaaagtcctagagacaggtagacaggtggaatgtgacttatcg
cagtcacagccagtgccttgtatcctgggggaatcttgtgtgatgtccacctgtagtttt
gttggccacttcaaatctcgtaaggagagggaggcagagttcggcgccaaggccatggag
ttcaccaacgtctacatcaagaactttggcgaggactttgatgatgagaagctgaaggag
atcttctctgaatttggaaggaccctcagcgtgcgcgtgatgatggatgagagagggcgg
tcccgcgggtttggctttgtgaactatgagaaccacgaggacgcacagaaggcggtggag
cagatgaacggtaaagagctgaacggcaggatcctgtacgtgggccgagcccagaagagg
ctggagagacagggcgagctcaagcgcaagtttgagcagatcaaacaggagaggatccac
cgataccagggggttaatctgtatgtgaagaacctggacgatggaatcgatgatgagaga
ctgcgacgggagttcgccccatacggcaccatcaccagcgccaaggtgatgacggacgtc
ggccacagtaagggcttcggcttcgtgtgcttctcatcgccggaggaggccaccaaggcg
gtgacggagatgaacgggcgcatcgtggccaccaagccactgtacgtggcgctggcgcag
cgcaaggaggagcgcaaggccatcctcaccaaccagtacatgcagcgcctggccagcgtc
cgcgccctgcccgcgcccgtcatcggctcctaccagcagccctccggatacttcatgtcc
accgtgccgcagcctcagagtcgtaccttctacccgccgaacactgttcccccgatccgc
cccggcccccgctggactacccagcctcctaggcctcagggcccgtactcggctcagttt
gtccgctcggccgtcccgcgtcgtgcctccactccgatcagcagcgtcaggcaggcctcc
acccaggccccccgcgtcatgagcaacacgcagaagatggccaacatcggcacgcagacg
gctggcgggcgggccgccatgcccgggccgccggtccgaggggtgaaccagtacaagtac
tccaccggggtcaggaacatgcagcaggtcatcaccatgccaacccaggtcactgtgcaa
caggtgtcagagccggcggtgctggtgcggggacaggagcctctgacagcctccatgctg
gccgccgcccccctgatggaacagaaacagctgctgggggagcggctgtaccccctgatc
caggcgctgcacccctctctggcgggtaagatcaccggcatgctgctggagatcgacaac
tcggagctgctgcacatgctggaggcccgtgagtcactgcactccaaggtggatgaggcg
gtggcggtgttgcaggctcaccaggcgaaagaactctccccgaagaattga
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