Anguilla anguilla (European eel): 118210570
Help
Entry
118210570 CDS
T07545
Symbol
col2a1b
Name
(RefSeq) collagen, type II, alpha 1b isoform X1
KO
K19719
collagen type II alpha
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang04510
Focal adhesion
aang04512
ECM-receptor interaction
aang04518
Integrin signaling
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118210570 (col2a1b)
04518 Integrin signaling
118210570 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118210570 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
aang00536
]
118210570 (col2a1b)
Glycosaminoglycan binding proteins [BR:
aang00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118210570 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
VWC2L_2nd
Motif
Other DBs
NCBI-GeneID:
118210570
NCBI-ProteinID:
XP_035242741
LinkDB
All DBs
Position
13:complement(4375198..4452297)
Genome browser
AA seq
1490 aa
AA seq
DB search
MFSFVDSRTLLLLVATQVVLLALVKCQEEDDQEPGSCVQEGQRYSDKDVWKPQPCRICVC
DTGTVLCDEIICEELKDCPNPEIPFGECCPICPAGQGIPSGPAGAKGQKGEPGDITDVVG
PRGPAGPMGPPGEQGHRGDRGDKGERGSAGPRGRDGEPGTPGNPGPPGPPGPNGPPGLGG
NFAAQMTGGFDEKAGGAQMGVMQGPMGPMGPRGPPGPTGAPGPQGFQGNPGEAGEPGTSG
PMGPRGPSGPSGKPGDDGEAGKPGKGGERGPPGPQGARGFPGTPGLPGIKGHRGYSGLDG
GKGEAGAAGSKGEAGSSGESGAPGPMGPRGLPGERGRPGPSGAAGARGNDGLSGPAGPPG
PVGPAGAPGFPGAPGSKGEAGPTGARGPEGAQGPRGESGTPGSPGPAGASGNPGTDGISG
AKGSAGASGIAGAPGFPGPRGPPGPQGATGPLGPKGQSGDPGIPGFKGEAGPKGEHGPAG
PQGAPGPAGEEGKRGPRGEPGAAGPNGPIGERGAPGNRGFPGQDGLAGPKGAPGERGPSG
VSGPKGANGDPGRPGEPGLPGARGLTGRPGDAGPQGKVGPSGAAGEDGRPGPPGPQGTRG
QPGVMGFPGPKGGSGEAGKPGEKGLAGAPGLRGLPGKDGETGAGGPPGPAGPAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGTAGATGPRGERGFPGERGGAGPQGLQG
PRGLPGTPGTDGPKGAIGPGGGPGAQGPPGLQGMPGERGASGIPGPKGDRGDNGEKGPEG
APGKDGSRGLTGPIGPPGPSGPNGEKGESGPSGPPGAAGTRGGPGDRGETGPPGPAGFAG
PPGADGQPGAKGEQGEGGQKGDAGAPGPQGPSGSPGPSGPTGVSGPKGARGAQGPPGATG
FPGAAGRVGPPGPNGNPGPAGPAGAAGKDGPKGVRGDGGPPGRQGDAGLRGPAGAPGEKG
EPGEDGPSGPDGPSGPQGLAGQRGIVGLPGQRGERGFPGLPGPSGEPGKQGATGGGGDRG
PPGPVGPPGLTGPAGEPGREGNPGSDGPPGRDGATGIKGDRGNTGPVGAPGAPGGTGAPG
PVGPTGKQGDRGESGAQGPAGSPGPAGARGMAGPQGPRGDKGESGEGGERGQKGHRGFTG
LQGLPGPPGQPGDQGAAGPAGPSGARGPPGPVGPSGKDGSNGLPGPIGPPGPRGRSGETG
PSGPPGNPGPPGLPGPPGPGIDMSAFAGLSQPEKGPDPMRYMRADQASGNLRQHDAEVDA
TLKSLNSQIENIRSPEGSKKNPARTCRDLKLCHPDWKSGDYWIDPNQGCTIDAIKVFCNM
ETGETCVYPNPSKIPRKNWWSSKSKDRKHIWFGEAMNGGFHFSYGEDTLTASTASIQMTF
LRLLSTEAAQNLTYHCRNSVAYMDQASGNLKKALLLQGSNDVEIRAEGNSRFTYSVLEDG
CKKHTGHWGKTVIEYKTQKTSRLPIVDIAPMDIGGADQEFGVDVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagctttgtggattccaggactttactgctacttgtagcaactcaagtcgttcta
ttagcccttgtcaaatgtcaggaagaggatgaccaggagcccggcagctgcgtgcaagaa
ggccagcgctatagcgacaaggacgtgtggaagccgcagccgtgtcgcatctgcgtgtgc
gacacgggaaccgtcctgtgcgacgaaattatctgcgaggagctgaaagactgtcccaac
cccgagatcccattcggagagtgctgccccatctgccccgcgggccagggcatccccagt
ggacctgctggtgctaagggacagaaaggtgaacccggtgacatcacagatgttgtagga
ccaagaggaccagcaggccccatgggaccccccggagagcagggacaccgcggagaccga
ggcgataagggcgagaggggaagcgctggcccccgtggaagagatggagagcctggtacc
cccggaaaccccggcccccccggacctccaggacccaacggacccccaggcctcggcggg
aactttgctgctcagatgactggcggatttgacgagaaggctggaggcgcgcagatggga
gtgatgcagggaccaatgggccccatgggaccccgaggccccccaggacccaccggagcc
cctggcccgcaaggtttccaaggcaaccccggagaggctggagaacctggcacatctgga
ccaatgggaccccgcgggccatctggaccttctggaaaacctggagatgacggtgaagct
ggaaagcctggaaaaggtggtgaacgtggacctcctggccctcagggagctcgtggattc
ccaggaactcccggtcttcctggaatcaagggacacagaggatactcaggtctggatggt
ggcaagggagaggctggtgctgcaggttccaagggtgaggcaggttcttccggtgagagt
ggtgctccaggaccaatgggcccccgtggcctgcctggtgagagaggtcgtcctggacct
tctggagctgctggtgctcgcggtaatgacggtttgtccggccctgctggtcctcctggg
cccgtcggacctgctggagcccccggattccctggtgcccccgggtctaagggagaagct
ggacccactggagctcgagggcccgagggtgctcagggaccccgtggagagtcaggcacc
cctggatctcctggccccgctggtgcttctggtaaccctggtactgatggaatctccgga
gccaaaggatcggctggtgcttctggtattgctggcgcccctggtttccctggcccccgt
gggccccctggacctcagggagcgacaggacccctgggccccaagggacagtcgggtgac
cctggcatcccagggttcaaaggtgaagctggccctaagggagagcatggtcccgccggt
ccccaaggagcccctgggcctgcaggagaggagggcaagagaggaccgcgaggagaaccg
ggtgcagctggccccaacgggcctattggggagagaggtgctcccggtaaccgtggtttc
ccaggtcaggatggtctggctggtcctaagggggctccaggtgagcgtggcccctcaggt
gtgtctgggcccaagggagccaacggtgacccaggacgccctggagagcctggtctgcca
ggtgcaagaggtcttactggtcgccctggtgatgctggtcctcaagggaaagtcggtcca
tctggtgctgctggagaggacggtcgacccggtcccccggggccacagggaacccgcggg
cagcctggcgtgatgggcttcccaggccccaagggtggctcgggcgaggctggcaaacca
ggagagaagggactggctggagctccaggtctgagaggtttgcccggtaaagatggggag
accggtgctggcggaccccctggacctgccggccccgcgggagagagaggagagcaggga
cagcccggaccctccggcttccaaggtctacctggacccccaggtcctccaggtgaagga
ggcaagcccggtgatcagggtgtgccaggagaggcaggaacagctggcgctacaggtccc
agaggcgagcgcggtttccccggagagagaggcggcgctggaccccagggtctgcagggc
ccccgcggtctgcccggaactccagggactgacggacccaagggtgccattggccccggg
ggcggccccggtgcccagggcccccctggcctgcaggggatgcccggcgagaggggagct
tccggaatcccaggacccaaaggcgacagaggtgacaacggcgagaaaggaccagagggc
gctcccggcaaagacggctcccgaggtttgactggtcccattggccctccaggcccgtcc
ggtcctaatggggagaagggagagtctggcccttcagggccccctggagctgctggtacc
cgtggtggtcccggtgaccgcggagagaccggaccccccgggcctgcaggcttcgccggc
ccccctggtgccgatggccagcctggagccaagggagagcagggtgagggcgggcagaag
ggtgacgctggtgcccctggtcctcagggtccctctggatcccccggaccttccggtccc
accggtgtttctggacccaaaggtgcccgcggagctcagggcccacctggtgctactgga
ttccctggagctgcaggcagagtcggacctccaggccccaacggtaacccgggtcctgct
ggtcctgcgggagctgctggtaaagacggtcccaagggtgttcgtggtgacggtggtcct
cccggtcgtcagggagacgctgggctgcgtgggccagcaggcgccccaggagagaaggga
gagccgggagaggatggcccctctggtcccgacgggccatcaggaccccagggtctggct
ggacagcgtggtattgtgggtctgcctgggcagcgtggagagagagggttccctggcctt
ccgggaccttccggggaacctggcaaacaaggagctactggcggaggcggagaccgcggc
ccccccggccccgtcggcccccccggactcacaggacctgctggagagcctggcagagag
ggaaaccctgggtcagatggaccccctggaagagatggtgccactgggatcaagggcgat
cgcggtaacaccggtcctgttggggccccgggagcccccggaggtactggtgctccaggt
cccgtcggccccacaggcaaacagggcgacagaggagagtctggcgcacaaggacctgca
ggatcccctggacctgctggagctcgaggaatggctggaccccaaggaccacgcggagac
aagggcgagtcgggcgagggcggagagcgaggacagaagggccacagaggcttcaccggc
cttcagggcctgcctggacctcccggtcagcctggtgaccagggtgctgctggacctgct
ggccccagtggagcaagaggaccccctggacccgtcggcccctctggaaaagacggttcc
aacggtctgccgggcccgatcggaccccctggacctcgcggtcgctctggagagactggt
ccttctggtcctcctggtaaccctggcccccccggccttccaggccccccaggtcccggg
atcgacatgtctgccttcgcgggcctgtcccagccggagaagggcccggaccccatgcgc
tacatgagggccgaccaggcttccggaaacctccgccagcacgacgccgaggtggacgcc
accctcaagtccctcaacagccagatcgagaacatccgcagccccgagggctccaagaag
aaccccgcccgcacctgcagggacctcaaactctgccatcccgactggaagagcggagac
tactggatcgatcccaaccagggctgcaccatcgacgccatcaaggtcttctgcaacatg
gagacgggagagacctgcgtctaccccaacccgtccaagatcccgcgcaagaactggtgg
tccagcaagagcaaggaccgaaagcacatctggttcggagaggccatgaacggagggttc
cacttcagctacggggaggacaccctgaccgccagcaccgccagcatccagatgaccttc
ctgaggctgctgtccacggaggcggcccagaacctcacctaccactgccgcaacagcgtg
gcctacatggaccaggccagcggcaacctgaagaaggccctgctgctgcagggctccaac
gacgtggagatccgcgccgagggcaacagccgcttcacctacagcgtgctggaggacggc
tgcaagaagcacacgggccactggggcaagacggtgatcgagtacaaaacgcagaagacc
tctcgcctgcccattgtggacatcgcgcccatggacatcgggggagcggaccaggagttc
ggggtcgacgtcggcgcggtctgcttcttgtag
DBGET
integrated database retrieval system
