Anguilla anguilla (European eel): 118224201
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Entry
118224201 CDS
T07545
Symbol
col4a1
Name
(RefSeq) collagen alpha-1(IV) chain isoform X1
KO
K06237
collagen type IV alpha
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang04382
Cornified envelope formation
aang04510
Focal adhesion
aang04512
ECM-receptor interaction
aang04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118224201 (col4a1)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118224201 (col4a1)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118224201 (col4a1)
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118224201 (col4a1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
aang04147
]
118224201 (col4a1)
00536 Glycosaminoglycan binding proteins [BR:
aang00536
]
118224201 (col4a1)
Exosome [BR:
aang04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118224201 (col4a1)
Glycosaminoglycan binding proteins [BR:
aang00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118224201 (col4a1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118224201
NCBI-ProteinID:
XP_035267361
LinkDB
All DBs
Position
3:complement(17573855..17625923)
Genome browser
AA seq
1642 aa
AA seq
DB search
MLLTSCALFLAIIYSGVEWTRAEGCAGAGCGGKCDCSGVKGEKGERGFPGLQGNMGFPGM
QGHEGPTGPMGPKGDYGVPGAPGMKGIRGPPGLPGFPGNPGIPGIPGQDGPPGSPGIPGC
DGKKGERGTDGLPGVSGLPGPPGTPGLTGMKGDAGGVIGGSIPEKGEKGYAGFPGSEGPP
GPAGGPGPVGPTGPQGPRGYPGPPGPPGPKGDRLTFLGEKGEKGGPGIRGPPGPPGRPSH
ESGHPPVTHIEQGPQGEKGTPGDKGEKGYCQPYHSGVKGEQGPPGPRGKPGKDGEPGSKG
ERGYLGAPGYSGQPGEKGDRGPPGNAGGPPGPPGHPGSPGIKGERGFPGSHGDSGLPGRN
VEGPKGETGFPGESGQKGEQGPPGQSLSGPSGEDGRPGSPGPPGPAGDGDCTMERGFPGY
PGPPGLSGELGQKGEKGDTCVHCETAGVRGLPGAQGPPGRQGFPGAAGRKGEKGSTGLAG
APGNQGTPGNPGLMGAPGAHGAPGDIHVAPGLKGEKGVPGTHGQNGLPGVDGLPGRDGLS
GQPGPKGEPATVGIKGDRGLDGDPGLIGTPGERGPPGIPGYGRPGEPGEKGSHGAPGRPG
APGSVGPKGEPGKGVSSPGPQGTPGPRGETGRTGLQGDRGPQGDPGAPGSPGWKGDPGLP
GIGLPGLPGPKGYTGMSGAPGVPGEPGRPGQNGFDGRPGKNGQKGEPGRGLPGPKGYMGP
QGVTGFPGEKGSIGLPGIPGQEGQTGPPGAQGIKGEPGPTGRHGVEGPPGPPGLGEQGLP
GPMGPPGLPGPFGRGGVKGDKGYPGPAGLDMPGPQGEKGTPGFQGVPGSKGLPGRQGPAG
RDGFPGHQGIKGEMGVIGIPGPPGQPGSPGNIGSPGLRGHPGFTGPKGDFGDIGPKGERG
DRGQRGPAGNMSDVDMDQMKGEKGDLGDRGTPGGTGKKGHQGLPGVPGMPGKDGYPGSPG
QPGEKGDLGEPGVPGRAGTPGLKGHIGEMGLPGFSGPKGTKGTNGTPGHPGFPGLTGDKG
EKGDGGLPGVGVPGPPGEKGQNGEPGFPGSPGDKGHKGAMGIPGMPGKPGQKGDIGFEGH
QGSPGRPGEKGVPGLPGGAGEPGLQGRPGEPGLQGPSGPQGEKGEPGIDGIPGSSGERGD
PGLSGRGFPGTPGQVGSKGDKGSAGFSGIPGSPGIPGTKGDKGYPGTLGQQGRPGERGPP
GSSMEGPKGDRGLPGEPGEQGSPGAPGPAGVPGLAGSKGDKGDHGYPGPPGQEGLKGEIG
PPGAPGHTGLPGFNGPKGEIGQPGFPGFQGIKGEAGAAGGKGELGDRGFPGVKGNIGPPG
PQGPHTFIKGDIGLPGPPGLEGPRGTQGFPGYKGLQGVTGRQGPKGEDGQPGYHGRPGTK
GEPGPVGPAGPRGYTGPPGPDGVPGQVGPPGPSSMDHGFLVTRHSQSVDVPQCPGGTSLI
YDGYSLLYVQGNERSHGQDLGTAGSCLKKFSPMPFLFCDINNVCNFASRNDYSYWLTSPE
PMPMSMAPVTGDSIKPFISRCSVCEAPAMVIAVHSQTIMIPACPNGWDSLWIGYSFVMHT
SAGAEGSGQALASPGSCLEEFRSAPFIECHGRGTCNYYANSYSFWLATIEDEDMFTKPVP
TTLKAGNLRTHISRCQVCMKRT
NT seq
4929 nt
NT seq
+upstream
nt +downstream
nt
atgctgttgactagctgcgccttgttcctagcgatcatctactctggtgtggagtggaca
agggctgagggctgtgcaggtgcgggatgtggaggaaagtgtgactgcagcggtgtgaaa
ggagaaaagggtgagaggggatttcctggcctgcagggcaacatggggtttcctggaatg
caaggacacgagggcccaacggggccgatggggcccaagggtgattacggcgtgcctgga
gctcctggaatgaaaggaatacgtggtcctccggggttacctggattcccaggaaatcca
ggcattccgggaatcccaggacaggatggccctcctggttcaccaggaatcccaggatgc
gacgggaaaaagggagagcggggcactgacggactcccgggcgtatcgggactgccaggt
ccacctggtacccctggtctcacaggaatgaagggtgatgcaggtggtgtcattgggggt
tctattccagagaaaggcgaaaaagggtatgctgggtttccaggttcggaggggccccca
ggacctgcgggaggtccagggccagttggacccactggccctcagggacccagaggttat
ccaggtccacctgggccacctggaccaaagggtgacaggctgactttcctgggtgaaaag
ggagaaaagggaggtccaggtataaggggtcccccgggtccaccaggacgcccttctcac
gaatctgggcacccccccgttacccatatcgaacaaggacctcagggtgaaaaaggtaca
cctggtgacaaaggagaaaagggctactgtcagccataccacagcggggtcaaaggtgaa
caaggtccccccggccccaggggtaaaccaggcaaggatggagaacctggcagcaaaggg
gagagaggttatcttggagcacctggatacagtggacagccgggcgaaaaaggcgacagg
ggaccccctggaaacgctggtggcccccccggaccgcccgggcaccctggttctcctgga
ataaaaggagaacgaggttttcctggtagtcacggagactcaggtctaccaggcaggaat
gtggagggtcccaaaggagagacagggttccccggagaatcagggcagaagggagagcag
gggccgcctggccagtctctttcgggcccaagcggcgaagacggacgccctggatcaccc
ggacccccaggacccgcaggagacggagactgcactatggagcgagggttccccggatac
cccgggccccctggactcagcggcgaactgggacaaaagggtgagaaaggggacacctgc
gttcactgtgagaccgctggggtccgtggattacctggcgcccagggcccccccgggaga
caaggtttccccggagccgccgggcgaaagggagagaagggctcaactggacttgctggt
gctcctgggaaccagggtacgcctggcaacccagggctgatgggggcccccggtgcccac
ggtgcgccgggcgacatccacgtggcaccgggactgaagggggagaagggcgtgcctggc
acccatggccaaaatgggctgccaggtgtggatgggctccccggcagagatgggttatcg
ggccagcccggacccaagggagagccggcaactgtgggtatcaaaggagaccggggtcta
gatggggaccctggtttgatcggcactccaggagaaaggggtcctccaggtatccctggt
tacgggcgaccaggagagcctggtgagaagggcagtcacggggcaccaggacgtcctgga
gctccaggctctgtaggacccaaaggcgaaccgggaaagggtgtgagctcgcctgggcca
caggggactcctggacctcggggtgagacggggagaacgggactccaaggtgaccgaggt
ccccagggtgatcccggggcaccaggttcccccggatggaaaggtgacccaggcctccca
ggaatcggacttcctggcttacctggacccaaagggtatacgggtatgtcaggggctccg
ggagtgcccggagagccaggtcgtcccgggcagaatgggtttgatggacgtcccggtaaa
aatggacaaaagggtgaaccgggacgaggcttgccagggcccaaaggctacatgggaccc
cagggggtcaccggtttcccaggagagaaggggagcatcgggcttcctggaatcccagga
caagaggggcagacaggacctcccggagctcaaggaatcaaaggtgaacctggacctact
ggaagacatggagtagagggccccccaggtcccccgggactgggcgagcaggggttacct
ggacctatgggtcctccgggcttgcctggccccttcgggcgtggcggagtgaagggagat
aaggggtaccccggtcccgccggtttggacatgcccgggcctcaaggggagaagggtacc
ccagggtttcagggggtcccaggatcaaaggggttgcctgggcgacaaggccctgcggga
agagatggttttccaggccatcaaggtattaaaggagagatgggggtgattggaatccca
ggacctcccggacagcctggttcccctggaaatattggttcccctggattacgaggtcac
cccggttttactggtccaaaaggtgattttggtgatattggacctaagggagagcgagga
gatcgtggtcaacgggggcctgctggcaacatgagtgatgtggacatggaccaaatgaag
ggagagaagggtgacctcggggacagaggtacacctggggggacaggtaaaaaaggacac
caaggactgcccggagtaccgggaatgccagggaaagatggatatccaggttcacctgga
cagccaggtgagaaaggtgacctcggagaaccaggtgtaccaggacgcgcaggcacccct
ggactgaaggggcatataggagagatggggcttccaggattttctggacccaagggcact
aaaggaacaaatgggaccccggggcatccaggattcccgggtttgaccggggacaaagga
gagaagggggatggaggtctgccaggtgttggggttccaggaccaccaggcgaaaagggg
caaaatggtgagccaggatttccaggaagcccaggagacaaggggcataagggtgcgatg
ggtatcccgggaatgccaggaaaaccaggacagaagggagacatcgggttcgagggtcac
caaggtagccctgggcggccaggtgagaaaggagtccccgggttacctggaggagcaggt
gaaccgggtctgcaggggcgaccaggggaaccaggtctacagggcccttcgggtccacaa
ggggagaagggagagcctggcatagacggaatcccaggatcctcaggagagaggggagat
ccagggttatctggaagaggcttccctggaaccccgggtcaggtcggcagtaaaggcgac
aaaggcagtgcaggtttttcgggaattccaggaagccccggtatcccgggaaccaagggg
gataagggttacccaggcaccctagggcagcagggccggccaggggagcgggggcccccg
gggtcatccatggaggggcccaaaggagacagagggttacctggggagcctggagagcaa
ggctcacctggggccccggggcccgccggagtaccgggactggctggctcaaagggggac
aaaggagaccatgggtacccggggcctccaggacaagaaggactcaagggggaaatagga
ccacctggtgctcctggacatactggactgccaggatttaatggaccaaagggagaaatt
ggacagccaggcttccctggattccaagggattaaaggagaagctggagcagctggaggg
aaaggagaactgggagacagaggtttccctggagtgaaaggaaacattggcccccccggg
ccccagggaccccacacatttatcaaaggggacatcggccttcctggcccccccggactg
gaaggccccagagggacacaagggtttcctggatataaagggctgcaaggtgtgacagga
cggcagggtccaaaaggagaggatgggcagccggggtaccatggtcgaccaggcaccaag
ggagagcctggccccgtcggcccagcaggacccagagggtacactggccccccggggccc
gacggagtgcccggtcaggtggggccacccggtccctcctccatggaccacggcttcctg
gtgacccgacacagccaatcggtggatgttcctcaatgccctgggggcaccagcctcatc
tacgatgggtactccctcctttacgtccagggcaacgagaggtcacatgggcaggacctg
ggtaccgcggggagctgcttgaagaagtttagccccatgcccttcctcttctgcgacatc
aacaacgtctgcaacttcgcctccagaaatgactactcctactggctgacctctcccgag
ccaatgcccatgagcatggcgcccgttaccggtgacagcatcaagcccttcatcagcaga
tgttctgtgtgtgaggcccctgccatggtgatcgcggtccacagccagaccataatgatc
cccgcatgcccgaatggatgggactccctgtggatcggatactccttcgtcatgcacacc
agcgctggtgcggaaggttccggtcaggccctggcgtcccccgggtcctgcctggaggag
ttccgctccgccccctttatcgagtgccatgggcgtggcacctgcaactactacgccaac
tcctacagcttctggctggccaccatcgaggacgaagatatgttcacgaaacccgttcca
accaccctgaaagctggcaatcttcgaactcacatcagcaggtgccaggtgtgcatgaag
agaacataa
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integrated database retrieval system
