KEGG   Anguilla anguilla (European eel): 118224586
Entry
118224586         CDS       T07545                                 
Symbol
smx5
Name
(RefSeq) smx5
  KO
K12621  U6 snRNA-associated Sm-like protein LSm2
Organism
aang  Anguilla anguilla (European eel)
Pathway
aang03018  RNA degradation
aang03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:aang00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    118224586 (smx5)
  09123 Folding, sorting and degradation
   03018 RNA degradation
    118224586 (smx5)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aang03019]
    118224586 (smx5)
   03041 Spliceosome [BR:aang03041]
    118224586 (smx5)
Messenger RNA biogenesis [BR:aang03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    P-body specific factors
     118224586 (smx5)
  mRNA degradation factors
   5'-3' decay
    Lsm complex
     118224586 (smx5)
Spliceosome [BR:aang03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   LSm proteins
    118224586 (smx5)
 Complex C
  U2 snRNP components
    118224586 (smx5)
SSDB
Motif
Pfam: LSM SM-ATX DYW_deaminase
Other DBs
NCBI-GeneID: 118224586
NCBI-ProteinID: XP_035268007
LinkDB
Position
4:12620929..12623483
AA seq 130 aa
MTHFITHLWEWSIYCPVLETKGKYRVIIRRGYRVNMLFYSFFKSLVGKDVVVELKNDLSI
CGTLHSVDQYLNIKLTDISVTDPEKYPHMLSVKNCFIRGSVVRYVQLPADEVDTQLLQDA
ARKEAMQQKQ
NT seq 393 nt   +upstreamnt  +downstreamnt
atgacgcattttataacccacctatgggagtggagtatttattgtcccgttctcgaaacg
aagggaaaatatcgcgttatcattcgacgcggttacagagtgaacatgctgttctactcg
ttcttcaagtcgttggtgggcaaagacgtggtagtggagttaaaaaatgacttgagtatc
tgtggcacacttcactcagtagaccagtacttgaatatcaaactgacggacatcagcgta
actgatccagagaagtatccgcatatgttgtcagtgaagaactgcttcatccgtggctct
gtggtgcggtatgtgcagctacctgctgatgaggtggacacccaactgctgcaggatgct
gcccgcaaggaggccatgcagcagaagcagtga

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