Anguilla anguilla (European eel): 118229669
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Entry
118229669 CDS
T07545
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1 isoform X1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03008
Ribosome biogenesis in eukaryotes
aang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118229669 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
118229669 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aang03019
]
118229669 (xrn1)
03009 Ribosome biogenesis [BR:
aang03009
]
118229669 (xrn1)
03016 Transfer RNA biogenesis [BR:
aang03016
]
118229669 (xrn1)
03036 Chromosome and associated proteins [BR:
aang03036
]
118229669 (xrn1)
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118229669 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
118229669 (xrn1)
Ribosome biogenesis [BR:
aang03009
]
Eukaryotic type
Pre-60S particles
RNases
118229669 (xrn1)
Transfer RNA biogenesis [BR:
aang03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118229669 (xrn1)
Chromosome and associated proteins [BR:
aang03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118229669 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
Motif
Other DBs
NCBI-GeneID:
118229669
NCBI-ProteinID:
XP_035277735
LinkDB
All DBs
Position
6:6235032..6258674
Genome browser
AA seq
1722 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALEKGE
VLPTEARFDSNCITPGTEFMARLQEQLKYFVHSKLSTDRSWQGVSVYLSGHETPGEGEHK
IMEFIRSENAKPDHDPNTRHCLYGLDADLIMLGLTSHEPHFSLLREEVRFGGRKAQKRIT
APEETTFHLLHLSLMREYIDYEFSELKNKISFEYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYRTYISVLPSLTGYLNENGNLNLANFQKYLDKLSEFDREHFSEVFVDLK
WFESKVGNKYLNEAAGLAAEEAHAREGRKSKQVLDDSLSLTVLDGGKDSDGLPARDCGEE
DGEDDDLFETEFRQYKRSYYMTKLGVEVVSDEFLASQALCYVEGIQWILHYYYHGVQSWS
WYYPHHYAPFLSDVRNIAGLKLEFDLGKPFMPFEQLLGVLPAASKDLLPQCYQHLMTAES
SPIIEYYPLDFKTDLNGKQQEWEAVVLIPFIDETRLLAAMEPYSALMSAGEKARNRHTEC
ALYRYDSDLDYAYTSPLVELFPNIPHCHARQSPIPMDAWRVPLDTVVKRVEASLLYFCGF
PTLRHIRHTFCKKKAGVVVFQQSSRGENTILEIKRDQQREPDCDGVASLVLGRSVFVNWP
HLEEARIVAVSDGEMKFSLEEAPGVQTLYLGNTPPPTKVAYLSDKEQKDWLKEVQTVTEH
FSKRKGIIINETAVVLYGQLLTGRKYVVGHSGQVRLEKQWAKQVLPFAYQTIVKDIKAFD
PAFSRFRTLEELFPPTTIVFMVGNPYYGAMGEVQESADVISEGRVRVVFTVPCEPQLDAL
MQNQHKYSVKYSPGYVLASRLGVTSYLVSRFSGSIFIGRGSKRNPHGEQKANVGLNLKFN
KKNEEVPGYTKRTEKEWLYSAAVEELLAEYLERFSEVFDAVSRNSHDDVFYEDDVWPGED
ENGAEKVQEITSWLKTHPVSSSSRASCDLQILDAGIVEKIEEELEKSKLKKSSKKVRVTV
KPHLLFRPLEQQHGVVPDPDGEYRLFDRVVNVRESFTVPLGLRGTIIGIKGADREAEVLY
EVVFDEEFAGGLTIRCSPGRGYRLPPSALINLTHGSRLEFGGHKLTAIVKPQPASSAQQG
QKGQLGGLNHSPRSPLIPTQQQNGRQGFNLRAETQTNRNSPHKKNAQKGLCADEEFSSVW
QSLQGSGMPQIPLTQWQNNAAQGWGSGSPGQKRHQEGQQQDQGQSHRGEPQPSQPHCKPG
PAGNIRVLKRNEDFSSLFPSQNTPSKSNSEFDDLIANLKISKTSPAPPPQPKEGTANEPL
SPQSFAMKGTLMLKEMLKIDGSGSPGPAPDSAPSAATQNSSGGSGQYPGRRKPSKKLAAR
INKPQGGESPGQPLPPAPACAPPPPLIPTVASELARICMGLGMAPPEFAYIRSPQGLTVC
QVKLASGLLVHGPQCQTENEAKEKAALFALQRLNSVGSSFPIPPPLFSSMQPMRALAPGP
LPSVFGQPPGGLLMHPPAPGYAPLHWPSHGHLPHQGPPFYQGTYPGARPPNSGLPLGSHN
QFVPLQVTKKRVSGRRNAETREVYNSSYAGRHQGSEPPHLAQPGFGTASPKTPPASQEPQ
DKPAPATPNAPRQNPAPHTPGSASKRKARKLAVNFEAGKVLK
NT seq
5169 nt
NT seq
+upstream
nt +downstream
nt
atgggtgtaccaaaattttaccgatggatttcggagcgatatccttgcctcagtgaagtt
gtcaaggagcatcagattccggagttcgacaacctctacctggacatgaacggtatcatt
catcagtgctcccaccccaacgatgaagacgtgcacttccgcatctcagaagagaagatt
ttcgccgacattttccactacctggaggtcctctttcgcatcatcaaaccccgcaaagtg
ttcttcatggccgttgatggcgtcgcccccagagccaagatgaaccagcagcgcgggaga
cgattcaggtctgcgaaagaagcggaggataagataaagaaggctctggagaaaggagag
gttcttcccacagaggctcgatttgactcaaactgcataactccaggcacggagtttatg
gcccgactccaggagcagctgaagtattttgtccacagtaaactgtccactgacaggtcc
tggcaaggggtcagtgtgtacctgtccggccacgagacccccggggaaggagagcataag
atcatggagttcatccgctcggagaacgccaagccggatcacgaccccaacacccgccac
tgcctctacggcctggacgcggacctgataatgctcggactcaccagccatgagccccat
ttctccctcctgagagaagaggtgcgcttcggtgggcggaaggcccagaagagaattaca
gctcctgaggagactacttttcacctgctgcacctgtcactcatgagggagtacatagac
tacgagttctctgagctaaagaataagatctcgtttgagtacgacctggagcggatcatc
gatgactggatactgatgggcttcctggtggggaacgacttcattccgcacctccctcac
cttcacatcaaccacgacgccctgcctctgctataccgcacctacatcagcgtgctgcct
agtctgactggttacctcaatgagaatggaaacttgaacctggccaacttccagaagtac
ctggacaaattatcagagttcgaccgggagcacttcagcgaggtgtttgtggacctgaag
tggttcgagagcaaggtggggaacaagtacctgaacgaggcggcggggctggcggccgag
gaggcgcacgctcgcgaggggaggaagagcaagcaggtgctggacgactctctctctctg
accgtgctggacgggggtaaggactcggacggcctccctgccagagactgcggggaggag
gacggggaggacgatgacctcttcgagacggagttcaggcagtacaagcgctcgtactac
atgaccaagttgggcgtggaggtggtttcagatgagtttctggccagtcaggccctttgt
tatgttgagggtattcagtggatcctgcattactactaccatggagtccagtcctggagc
tggtactacccgcaccactacgcccccttcctgtcggacgtgaggaacatcgcggggctc
aagctggagttcgacctcggcaagcctttcatgccctttgagcagctgctgggagtcctg
cctgcagccagcaaagacctgctgcctcagtgttaccagcacctgatgacagcggagagc
tctcccatcatagagtactaccccctggactttaagaccgacctcaatggtaaacagcag
gagtgggaggccgtggtcctcatccccttcatcgacgagactcggctgctggctgctatg
gagccctacagtgctctgatgagtgcgggagagaaggccaggaacaggcacacagagtgt
gctctgtaccgctacgacagcgatctggactacgcctacacctcccccctggtggagctc
ttccccaacatcccccactgccacgccaggcagtcccccatccccatggacgcgtggcgc
gtgccgctggacaccgtggtgaagcgggtggaggccagcctgctgtacttctgcggcttc
cccactctccggcacatccgccatacgttctgtaagaagaaggccggggtggtggtgttc
cagcagagcagcagaggggagaacacgattctggagatcaagagggaccagcagagggag
ccggactgtgatggcgtggcgtccctggtcctggggaggtccgtgtttgtgaattggccc
cacctggaggaggcgcggatcgtggccgtgtcggacggggagatgaagttcagcctggag
gaggccccaggagtgcagacgctgtatctaggcaacacgccgccgcccaccaaggtggct
tacctgagtgacaaggagcagaaggattggttgaaggaggtgcagaccgtcactgaacat
ttctctaagaggaaggggatcatcattaacgagactgcagttgtgctgtatgggcagctg
ctgacaggaaggaagtacgtggtgggccacagcggccaggtgcgcctggagaaacagtgg
gccaagcaggtcctgcccttcgcctaccagaccatcgtcaaggacatcaaggccttcgac
cccgccttctcccgcttcagaaccctggaggagctgtttccaccgacgaccatcgtcttc
atggtggggaacccctattatggggctatgggagaggttcaggagtctgctgatgtcatc
agcgagggacgggtccgggtggttttcactgtgccttgtgaaccacagctcgacgcgtta
atgcagaaccagcataagtactcagtgaagtacagcccgggctatgttctggcgtctcgg
ctgggcgtcaccagttacctcgtgtccaggttctctggcagcatcttcatcggaagaggc
tccaagaggaaccctcatggggagcagaaggccaacgtgggcctgaacctgaagtttaac
aagaagaacgaggaggtcccggggtacaccaagaggaccgagaaggagtggctctactct
gcagccgtggaggagctgctggccgagtacctggagaggttctctgaggtgtttgacgca
gtctccaggaacagtcacgatgacgtcttctacgaggacgacgtctggccgggagaggac
gagaacggggctgagaaggtccaggagatcacctcctggctgaagacccacccggttagc
tcctcctcccgtgcgtcatgtgacctgcagatccttgacgcgggcattgtggagaagatc
gaggaggagctggagaagtccaagctgaagaagagcagcaagaaagtcagagtgaccgtg
aagccacacctcctgttcaggcccctggagcagcagcacggcgtggttcctgatcctgat
ggggagtaccggctgtttgaccgcgtggtgaacgtgagagagagcttcaccgtgccgctg
ggcctgaggggaaccatcatcggcatcaagggggctgacagggaggctgaggttctgtat
gaggtcgtgtttgatgaggagtttgctggaggtctcaccatccggtgctctcctgggcgg
ggctaccgcctgccccccagtgccttaatcaatctgacccacggcagccggctggagttc
ggcggccacaaactgaccgccatcgtcaagccacagcccgcgtcctccgcgcaacaaggc
cagaagggtcagctggggggcctgaaccactccccccgctcccctttaatacccacacag
caacagaatgggagacaaggcttcaatctcagggctgaaactcagacaaacagaaactcg
cctcataagaagaatgcgcagaagggcttgtgtgcggatgaggagttcagcagtgtgtgg
cagtccctgcagggttctggaatgccccaaatccccctcacccaatggcagaacaatgct
gctcaaggctggggctctggctctccggggcagaagaggcatcaggaggggcagcagcag
gatcagggacagagccaccgcggtgaaccccagccctcgcagcctcactgcaagcctggt
cctgctggaaacatcagagtactgaagagaaatgaagacttcagctctctcttcccctcc
cagaacacaccgagcaagagcaactctgagtttgacgacttgatcgcgaacctgaagatc
tctaagaccagcccggccccgcctccccagcccaaagaggggaccgccaacgagccgctg
tcccctcagtccttcgccatgaaggggacacttatgctgaaggaaatgctgaagattgac
ggctcaggcagccctggccccgcccctgactccgccccttcggccgccactcagaactcg
tccggcggcagtgggcagtaccccggcaggaggaaaccgtccaaaaagctggccgcccgg
atcaacaaaccccagggaggggagtctccggggcagcctttgccccccgcgccggcctgc
gccccccctccgcccctcatccccaccgtggcgtctgagctggcccggatctgcatgggt
ctgggcatggccccccccgagtttgcatacattcgcagcccccagggcctgacagtgtgc
caggtgaagctggcaagcgggctgctggtccacgggccgcagtgccagaccgagaacgaa
gccaaggagaaagcggcgctgttcgccctccagcggctgaactcagtgggctccagcttc
cccatccctccccccctgttctccagcatgcagccgatgagggcgctggcaccgggaccc
ctgccctctgtattcggccaaccacctgggggtctgctgatgcaccctccggctccgggc
tacgcccccctgcactggcccagccacggccacctcccccaccagggcccgcccttctac
cagggcacgtaccccggggcgcggcccccgaactccggcctgcccctcggctcccacaac
cagttcgtcccgctgcaggtaacgaagaagcgcgtgtcgggccggaggaacgcggagacg
agggaggtgtacaactcgagctacgcgggacggcaccaaggaagcgagcccccccaccta
gcccagcccggcttcggcacggcgtccccaaagactccccccgcctcccaggagcctcag
gacaagcccgcgcccgccacacctaacgcccccaggcaaaaccctgcccctcacaccccc
ggctccgcctccaagaggaaagccaggaaactggctgtgaactttgaggctgggaaggtc
cttaaatga
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integrated database retrieval system
