Anguilla anguilla (European eel): 118230053
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Entry
118230053 CDS
T07545
Symbol
xrn2
Name
(RefSeq) 5'-3' exoribonuclease 2 isoform X1
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03008
Ribosome biogenesis in eukaryotes
aang03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118230053 (xrn2)
09123 Folding, sorting and degradation
03018 RNA degradation
118230053 (xrn2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aang03021
]
118230053 (xrn2)
03019 Messenger RNA biogenesis [BR:
aang03019
]
118230053 (xrn2)
03009 Ribosome biogenesis [BR:
aang03009
]
118230053 (xrn2)
03016 Transfer RNA biogenesis [BR:
aang03016
]
118230053 (xrn2)
Transcription machinery [BR:
aang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118230053 (xrn2)
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
118230053 (xrn2)
Ribosome biogenesis [BR:
aang03009
]
Eukaryotic type
Pre-60S particles
RNases
118230053 (xrn2)
Transfer RNA biogenesis [BR:
aang03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118230053 (xrn2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
118230053
NCBI-ProteinID:
XP_035278661
LinkDB
All DBs
Position
6:complement(47545160..47571088)
Genome browser
AA seq
970 aa
AA seq
DB search
MGVPAFFRWLSRKYSSIIVHCVEEKSKECNGVRVPIDTTRPNPNEVEFDNLYLDMNGIIH
PCTHPEDKPAPKNEDEMMVAIFEYIDRLFNIVRPRRVLYMAIDGVAPRAKMNQQRSRRFR
ASKEGVELVEEKQRMREEVIQRGGYLPPDEIKERFDSNCITPGTEFMDNLAKCLRYYVAD
RLSNDPGWRNVTVILSDASVPGEGEHKIMDYIRRQRAQPNHDPNTHHCLCGADADLIMLG
LATHEPNFTIIREEFKPNKPRPCALCGQVGHEIKDCQGVAREKQGEHDQFADTLPASEQE
FIFIRLCVLREYLERELTMASLPFPFDFERSVDDWVFMCFFVGNDFLPHLPSLEIREGAI
DRLVNIYKDVVHKTGGYLTENGFVNLERVELIMQAVGVAEDNIFKKRKEDDEGFKRRMKE
KKKRMKAEQRPSFMPGGQFAPHALGGRDRPQAVQNARHAAFDMRMQGRDQQNKDAAQSLK
AMMRNGNQSSAGPSGALDGKGMKRKADDSDSEPEPEDNVRLWEEGWKQRYYKNKFDVDVT
DEAFRRKVVRSYVEGLCWVLRYYYQGCASWKWYFPFHYAPFASDFKDIKDLFTEFETDTK
PFKPLEQLMGVFPAASGNFLPETWRVLMSDPDSSIIDFYPDDFALDLNGKKYAWQGVALL
PFVDERRLRAALEEVYPDLSPEEVKRNSLGSDVLFVGKSHPLCDFVQELYSAGSSEGTEM
PPELCHGIQGTLNLDEEPILPDKPVESPIPLLRDLAQNMAIGIKFKDPQFEEGFVFKAVV
LPGAKVPTKVLKPGDWERSSQGPWRPQLGFNPNRQQAHLDQSGFRALGHAMNRDRPAGGQ
YSNTPPPSNYRQGQGNYNRGSFHQGSYQQGGYHQQQGAHMQPYQNPRQPVHQSAPPLFNP
QAYPGQQYGHQGWDRAMQGQAGAYLQNQQRGHGGPGAYQQQQDSSRGQQQGYNSGRSYPL
PPPARRYNWN
NT seq
2913 nt
NT seq
+upstream
nt +downstream
nt
atgggagtcccggcattttttcgttggctgagtcggaagtattcttcgattattgttcat
tgtgtggaggagaagtcaaaggaatgcaatggagtccgtgtacctattgataccaccaga
ccaaatcccaatgaagtcgagtttgacaacttgtacttggacatgaatggaattatccac
ccctgcacacaccccgaggacaagcctgccccaaaaaatgaggatgaaatgatggttgct
atttttgaatatattgaccgcttgttcaatattgttcgtccaagaagagttctctatatg
gccatagatggagttgcccctcgtgccaaaatgaaccagcagcggtcgaggcgattccgt
gcctctaaggagggggtggagcttgtagaagagaaacagcgaatgagggaagaagtcatc
cagaggggaggatatctgccacctgatgaaattaaggagaggtttgacagcaattgcatc
acaccaggcacagagttcatggacaacctggcaaagtgcctgaggtactacgttgctgac
aggctgagcaatgatccagggtggcgcaacgttacggtcatcttgtcggacgccagtgtt
cctggggagggagaacataaaataatggactacatcaggaggcaacgagcccaaccgaac
cacgatcccaacacgcaccattgtctttgtggagctgacgccgatctgataatgctgggg
ctggccacgcacgagcccaatttcaccatcatccgggaggagttcaagcccaacaagccc
aggccctgcgccctgtgcggccaagtgggccacgagatcaaggattgccagggcgtggcc
agggagaagcagggcgagcacgaccagttcgccgataccctccctgcctcggaacaggag
tttatcttcattcgcctgtgtgttttacgggagtacctggagagggagctgaccatggcc
agtttgccttttccgtttgacttcgaaaggagcgtcgatgactgggtcttcatgtgcttc
ttcgtcggcaacgacttcctgccccacttaccgtcactggagatcagagagggtgccatt
gatcggctggtcaacatctataaagacgtggtgcacaagaccgggggataccttacagag
aacgggttcgtcaacttggaacgtgttgagctcatcatgcaggccgtcggggtggccgaa
gacaacatcttcaagaagcgcaaagaggacgacgagggtttcaaacggagaatgaaagag
aagaagaagaggatgaaagcagagcagcggccttcgttcatgcccggggggcagttcgct
ccccatgccctgggcgggagagacaggccccaggccgttcagaacgcccgccatgccgcc
tttgacatgaggatgcagggcagagaccagcagaacaaggacgccgctcagtctttgaaa
gccatgatgaggaacggcaaccagtcttccgcggggcccagcggtgctctggacgggaag
ggtatgaagaggaaggccgacgacagcgacagcgagcccgaacccgaagataacgtcagg
ctgtgggaggagggctggaagcagcgctactacaagaacaagtttgacgtggacgtgacg
gacgaggcgttccgacgcaaagtggtcaggtcctacgtggagggcctctgctgggtgctg
aggtactactatcagggctgtgcttcctggaagtggtacttcccgttccattacgccccc
ttcgcctcggacttcaaagacatcaaggacctgttcaccgagttcgagacggacaccaag
ccgttcaaacccctggagcagctgatgggcgtgtttcctgcggccagcggcaacttcctg
cctgaaacgtggcgggtgctcatgagcgacccggactcctccatcatcgacttctacccc
gacgacttcgcgctcgatctgaacgggaaaaagtacgcttggcaaggcgtggccctgctg
ccctttgtggacgagcgcaggctgagggccgcgctggaggaagtctaccccgacctctcc
ccggaggaagtcaaaaggaacagcctcgggagcgatgtgctgttcgttggcaagtcgcac
ccgctctgcgacttcgtacaggagctgtacagcgcaggttcgagcgagggcactgagatg
cctcctgaactgtgtcatggaatccaaggtacattaaatcttgatgaagagcctattcta
ccagataaacctgtcgagtcccccatccccctgttgagggacctggctcagaacatggcc
attggaataaaattcaaggatccgcagtttgaagagggctttgtgttcaaagctgtagtt
ctgccaggagcaaaagtccccacgaaggtgctgaagccaggggactgggagaggtccagc
cagggcccttggaggccccagctggggttcaaccccaacaggcagcaggcccacctggac
cagtcaggcttccgcgctctcggccacgccatgaacagggatcgaccggcgggcgggcag
tacagcaacaccccgcctcccagcaactaccgccagggccagggcaactacaaccgcggc
agcttccaccagggcagctaccagcagggcggctaccaccagcagcagggcgcccacatg
cagccctaccaaaatcccagacaacctgtccatcagagtgcacctcccctcttcaaccca
caggcgtacccagggcagcagtacgggcaccagggctgggacagggcgatgcagggccaa
gcgggcgcctacctgcagaaccagcagcgggggcacggcggaccgggcgcctaccagcag
cagcaggacagcagccgtgggcagcagcagggatacaactctggaaggagttaccctttg
ccacctccagcaagaagatacaattggaattag
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