Anguilla anguilla (European eel): 118234870
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Entry
118234870 CDS
T07545
Symbol
pcf11
Name
(RefSeq) pre-mRNA cleavage complex 2 protein Pcf11 isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
aang
Anguilla anguilla (European eel)
Pathway
aang03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aang00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118234870 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aang03021
]
118234870 (pcf11)
03019 Messenger RNA biogenesis [BR:
aang03019
]
118234870 (pcf11)
Transcription machinery [BR:
aang03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118234870 (pcf11)
Messenger RNA biogenesis [BR:
aang03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
118234870 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PCF11_charged
Pcf11_helical
CID
Pfc11_Clp1_ID
Pcf11_C
zf_PCFS4
DUF6980
Motif
Other DBs
NCBI-GeneID:
118234870
NCBI-ProteinID:
XP_035287589
LinkDB
All DBs
Position
9:complement(41313785..41328993)
Genome browser
AA seq
1713 aa
AA seq
DB search
MSDDAAREDACREYLSSLEDLTFNSKPHINMLTILAEENLHFAKDIVAIIEAQIAKAPPA
EKLPVLYLVDSIVKNVGGEYLDVFAKNLVSSFICVFEKVDENTRKSLFKLRSTWDEIFQL
KKLYALDVKVNSVDPAWPIKPLPPNVNASIHVNPKFLKQTEEVTAPRAKTPQPLSHPVVS
EKNLTQEQVIRQQLLAKQKQLLELQQKKIELELEQTKAQLAANQLVSTTNPSVIPANQPS
IGVKVSPLTTTQPIKPYLPPPSDTKVPTRDPRLIRGSQATGFVKEQVPNKKDSRGFGTAA
HPSDKKANLSTDKQNKLEKTKIPKKEFLSEEKPKSKSPSPSTKGVQGKNKTPELENVKAT
EVNKRDPRLRKHLHDKTDVKEEDVKEKKRGSDKKERDDSTKALEHRSLGTRSKLANGSVN
KHEPLEKLDSKPTKGNARKRSRSRSRSPVLHSPKRKDRRSPKRRTRSISSSPPKFGKGRQ
AVGKHAHTEDFPQHGNIREERSTPKKSTSEPRRTKRSLEERPVEARESHSPRLPLETKEN
AKRWRSGWEENKRLKQPEESLPHGKSGQRHKASWSSSPRVTTPRTPKQHRLSVDANLQIP
EVLNSASKHDLLKKASKRLADGEISHDDFLGVAHQIKQLFQYQEEKQRSDSWEGSEDGQP
VSKKKPLLATPPSQQGNLSDAEITYYEHKAKLRRTQVQRQGNDVWDADDSFSSEEAVVRE
IEFPKGHPGTRTGDSHFRKHDEGTEGPVCTSPIKSNRPEGPKRSQENKVMFEEHATLDVN
KDLPSNKRGVLRLKGQPGQDYRKRGDPREYSDERLKVKMEGGRDNHSPYSERLQLQRPPH
EETDQGKSSLESQKRYGGVNEAIKLEDSANQPCSRHDELRKNDRPSNSGLLYKNSPSPVN
FESLAGKSPVRGFDSSSCLDVDSHPMTVREPSPSQRFDIPSSCEHPITGSEGDVPLSVEV
PPRHDIPSGPGRSGQPSQMLCEASGQTPPHSSEGPLSQSGLSRYDGGKHPQRFDGPQGPK
PMIFDGPSHMGQPRMDGPSRSHVPGRFDVNPGPGRFDGPSGPHNTSRFDGQHTPGQSRFD
GPQGPGRFNGPHLHKGPERFDGPSRYDSPSMQPGPTRFSEPQGLGRFDGSHIQQGTSRFD
GPAGQQPPGRFDSQGPIRFDGSQMQPNRFEGPLRYDNPQMPQGLARFETPVRFGGPQVQG
QGPVRYDGPQPGPVRFDASINQPGTMRFENSQGQLGPMRFDGQGMSRFDCPPGQQPPPRF
CGPQSLQNQMRPQGPPMFETPQGPGPLTNPVSQQPANFNMPNHRFSEPLNMFSSAPQPFQ
GQQNMSQGANFSVSAVPGPSAFSNTYVRPVESFYNPGAPVVSVGSLNPSLPVGNVPQPIN
MLSGLGKTQLSAPYSQGQPFIPTQNTVPFNQAGPQESHFGQVDVNDLLSKLISTGIIKPP
QTDTAPNESTAPTPVQPPAEEEEEEEQEDDHDIPDLTGFVIEDMKQRYESVITKLYTGIQ
CYSCGMRFTASQTDVYADHLDWHYRQNRSEKDISKKVTHRRWYYSLTDWIEFEEIADLEE
RAKSQFFEKVHEEVVQKTQEAAKEKEFQSVKAAPAVVAESCEICQEQFEMYWEEEEEEWH
LKNAIRVEGKTYHPSCYEDYKNTSSFVDCTPSPSKAPVENPLNLFIKQENDDQSTCSSIK
QETDTQSGSAEENIEDKVQVHSEAEKQVSAIIF
NT seq
5142 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacgacgcggcgagggaagatgcttgcagagagtatctgtcgtccctggaagat
ttgactttcaacagcaaacctcacatcaacatgctgaccattcttgccgaggagaacctg
cacttcgccaaggatatcgtcgcaataattgaagcacaaatcgccaaggcacctccagca
gagaagcttccagttttgtacttagtggattccatagtgaagaatgttgggggcgaatat
cttgacgttttcgctaaaaacctagtctcttcgtttatttgtgtttttgaaaaggttgat
gagaacactagaaaaagtctattcaaattgcgatccacctgggatgagatttttcagttg
aagaaactttatgcgttagatgtcaaagtgaattctgtagatcctgcatggccaatcaaa
ccactgccgccaaatgtgaatgccagcatccatgtgaaccccaaatttttaaaacaaact
gaggaagtaacagctccaagagccaaaaccccacaacctctgagccacccagtggtgagt
gagaagaatttgacccaggagcaagtaataaggcagcagttgcttgcaaagcaaaagcaa
ttgcttgagctacagcagaagaagatagagctagaacttgaacaaacaaaagctcaactg
gctgctaatcagttggtttctacaaccaatccatccgttattcctgcaaaccaacctagt
attggggtgaaagtcagtccactgaccactacacaaccaattaaaccctatctaccacca
ccctctgacaccaaggttcccacaagagacccccgcttgatcagaggaagtcaggccact
ggctttgtgaaggagcaagtgccaaataaaaaggacagtcgtggatttggaactgccgca
cacccgtcagataagaaagcaaatttatcaactgacaagcaaaataaactagaaaagaca
aaaatccctaaaaaggaatttttatctgaggaaaagcctaaatcaaaatctccttcccct
tcgacaaaaggggttcaaggaaaaaataaaacccctgaacttgaaaatgttaaagcgaca
gaggtcaacaagagggacccgaggttacgaaaacatctccatgataagactgatgtgaaa
gaggaagatgttaaagaaaagaaaaggggttctgacaaaaaagagagggatgactccacc
aaagccttggagcacagatcattaggcaccagaagtaaacttgcaaatggttcggttaac
aagcatgaacctctggagaaactggactccaaaccaactaaaggcaatgcaaggaaaaga
tctcgctcaaggtctcgttcacctgtgctgcactctccgaaaaggaaagacagacggtct
ccaaagaggagaaccagaagcatttcttcatctcctccaaagtttgggaagggaaggcaa
gccgtaggcaaacacgcacacacagaagactttccacagcatggtaatataagggaagaa
agaagcactcccaaaaagagcacaagcgaaccaaggaggaccaaacggtcactggaggaa
aggcctgttgaagcaagagaatctcattcaccgagattacctttagaaactaaagaaaat
gccaagaggtggcgaagtggatgggaggaaaacaaacgcctgaaacagcctgaagagagc
cttccacatggaaaatcaggacaaagacacaaagcatcttggtcaagcagtccgagagtt
accacacctcgcacaccaaaacagcatcgcctcagcgtcgatgccaacctgcaaatacca
gaagtgcttaactctgcaagtaaacatgaccttctgaaaaaggctagcaaaagacttgct
gatggtgaaatatcccacgatgacttccttggtgtggcccatcaaatcaagcagcttttt
cagtaccaagaggaaaagcaaagatctgactcttgggaaggaagtgaagacggacagcct
gtgagcaaaaagaagcccttgctggccacacccccatcgcagcaggggaatctgtccgat
gctgaaattacttactatgagcataaagctaagttgagaagaacccaggtccagcgtcaa
ggtaatgatgtttgggatgcagacgacagcttctcgagtgaggaggcggttgtgagagaa
attgagttccccaaaggacaccccggaacaaggactggggatagccactttagaaaacat
gatgagggtactgaaggacctgtgtgtacctcccctataaagagtaacaggccagaagga
cctaagcgttcccaagaaaataaagtcatgtttgaagagcatgctactttagatgttaat
aaagatttgcctagtaataaaaggggagttctcaggctgaaaggacagcctggacaggat
tacaggaagagaggtgatcctcgtgaatatagtgatgaaagactaaaggttaagatggaa
ggtggaagagataatcactcgccatacagtgagagactgcaacttcagaggccaccacat
gaggaaactgatcaaggaaaaagtagcttggaatcacagaagagatatggaggagtaaat
gaagccataaagcttgaagattctgcaaaccagccatgttcaaggcacgatgagcttaga
aaaaatgatagaccttcaaattctggtctgttgtacaaaaactccccaagtcctgtcaat
tttgagagccttgctggaaaatcacctgtaagaggctttgacagttcatcctgcttagat
gtagatagccacccaatgactgtacgggaacccagccctagtcagagatttgacattccc
tccagctgtgagcatcccattacgggatctgagggtgatgttccactaagtgtggaggtc
cctcctagacatgatattccatcaggaccaggcagaagtggacagccaagccagatgctg
tgtgaagcttccggacagacaccgcctcattcttcagaaggtcccctttcacagtctggc
ttatcacgatatgatggtggaaaacacccacagaggtttgatgggcctcaaggtccaaag
cctatgatttttgatggcccgagtcatatgggccagccgaggatggacggaccgtcaaga
tctcatgtaccaggcaggtttgatgtgaatcccggaccaggacgatttgatggaccgtct
gggcctcataacacttcaaggtttgatggacaacatacgccgggccaaagtagatttgat
gggcctcaagggcctggaagattcaatggcccacatttacataagggtccagagaggttt
gatggtcctagtagatatgacagtccatctatgcaacctggtcctacaagattcagtgaa
ccacagggtcttggaagatttgatggatcacacattcaacaaggtacaagcagatttgat
ggaccagccggacagcagcctccaggcaggtttgacagccaaggtccaatccgatttgat
gggtcgcagatgcagcctaatagatttgaagggccattgagatatgataatccccaaatg
ccacaaggtcttgcaagatttgaaacgccagtgcggtttggtggcccacaggttcaagga
caagggcctgttcgatacgatgggcctcaacctggaccagtgaggtttgatgcgtctatt
aatcagcctggtactatgcgatttgaaaactctcaaggacaactgggacctatgagattt
gatgggcaaggtatgtcacgatttgactgtccacccggtcagcaaccacctcccaggttc
tgtggcccacaaagtttgcaaaaccaaatgcgaccacaaggcccgcctatgtttgagaca
ccacagggtccgggacctctgactaatcctgtcagccagcagccagcaaatttcaacatg
cccaatcacaggttttctgaaccattaaacatgttcagcagtgcaccacagccttttcaa
ggacaacaaaatatgtctcaaggagcaaatttcagtgtctcagctgttcctggaccttct
gctttctctaatacatatgtcaggcctgttgaatctttttacaaccctggtgctccggtt
gtctctgttggaagtttgaatccttcacttccggtgggaaatgttcctcagcctattaat
atgctgtctggtcttggaaaaacgcaattgtcagctccttacagccaaggacagcccttc
ataccaacacagaacactgtgcctttcaaccaagcaggtccacaagaaagtcattttgga
caggttgatgttaacgacctgttatcaaagctgatctctacaggaataataaaaccaccc
cagacagacacagctccaaacgagtcaactgcacccactccagtgcagccaccagctgaa
gaggaggaggaagaggagcaagaagatgatcatgatatccctgatctcactggctttgtt
attgaagacatgaaacagagatatgagagtgttatcactaaactgtacactggaatacag
tgttactcttgtgggatgcgtttcactgcttcacaaacggatgtatacgctgatcacttg
gattggcattatagacaaaacagatcagagaaggacatcagcaaaaaggtcacgcacaga
aggtggtactacagccttacggactggattgaatttgaggaaattgctgaccttgaggag
agggcaaagagtcagttttttgagaaagtccacgaggaggtggtgcagaaaactcaggaa
gctgcgaaagagaaagaattccaaagtgtcaaagcagctccagctgttgtcgctgagtcc
tgtgaaatctgtcaggagcagtttgagatgtactgggaagaggaggaggaagagtggcac
ctgaaaaatgcaatccgtgttgaagggaagacatatcacccgtcgtgttacgaggactac
aaaaatacgtcttcattcgtggactgcactccgtcccccagcaaagctcctgtggaaaac
cctttaaatttgtttatcaaacaagagaatgatgaccagtccacctgttccagtattaaa
caagagacagacacgcagagcggctctgccgaagaaaacatagaagataaagttcaggtt
cattcagaggctgaaaaacaagtcagtgcaattattttttaa
DBGET
integrated database retrieval system
