Aquirufa antheringensis: G9X63_03870
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Entry
G9X63_03870 CDS
T08298
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aanh
Aquirufa antheringensis
Pathway
aanh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aanh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
G9X63_03870 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aanh03021
]
G9X63_03870 (rpoC)
03400 DNA repair and recombination proteins [BR:
aanh03400
]
G9X63_03870 (rpoC)
Enzymes [BR:
aanh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
G9X63_03870 (rpoC)
Transcription machinery [BR:
aanh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
G9X63_03870 (rpoC)
DNA repair and recombination proteins [BR:
aanh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
G9X63_03870 (rpoC)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
BSH_YknX
RPOC_hybrid
NQRA_N
Motif
Other DBs
NCBI-ProteinID:
USQ03276
LinkDB
All DBs
Position
832233..836564
Genome browser
AA seq
1443 aa
AA seq
DB search
MSFKKTRKLNSDFQKVTISLASPESILEGSNGEVTQPETINYRTYKPEMGGLFCERIFGP
TKDWECHCGKYKRIRYKGIICDRCGVEVTEKKVRRERMGHIELVVPVAHIWYFRSLPNKI
GYMLGLSTKKLDQVIYYERFVVVQPGMYAEEGKIGSQYLDFLTEDEYLDILDKLPRENQH
LPDEDPQKFIAKMGADALNMLLTRIDLDSLSADLRHSADTESSQQRKAEALKRLKVVEAF
RESIGRIDNRPEWMIIKMVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLI
EIKAPEVILRNEKRMLQEAVDSLFDNSRKVNAVRSEGNRALKSLSDMLKGKQGRFRQNLL
GKRVDYSGRSVIVVGPELKMHECGLPKDMAAELFKPFVIRKLIERGIVKTVKSAKKIVDR
KDPVVWDILENVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLTCTAFNADFDG
DQMAVHVPLGHEAILEASLLMLASHNILNPANGAPITVPSQDMVLGLYYVTKGRKSTPDH
KVEGEGHRFYGFEEVVIALNEKKLSKHANIVVKATVRKDDGTLVEEMVETVAGRVLFNLC
VPTAVGYINELLTKKKLQQIISHVHKICGMARTAQFLDDIKELGFQQAFHGGLSMGIGDV
QIPAEKASLVKKAQEDVQAVWDNYLMGLITDNERYNAVIDIWTKVNSKITETLMKQMEED
NQGFNAIYMMMHSGARGSREQIRQLGGMRGLMAKPQKNLQGSVGEIIENPILSNFKEGLD
VLEYFISTHGARKGLADTALKTADAGYLTRRLHDVAQDVIVNEEDCGTLRGIEVFPLKDN
EEIIEPLSERILGRVSIHDVYDPITNELIVASGDEINEAIATKIDETAIESVEIRSVLTC
ETLSGVCAKCYGRNLATAAMVNLGEAVGVIASQSIGEPGTQLTLRTFHVGGTAQNVSLDA
SVKAKFDGVINFEEVRSVSSTDADGNPVEIVMGRSGEVQIVNPANKQILISSNIPYGSFL
RVKEGQAVKKGDEICAWDPYNAVILSEAEGKIEFEAIEENNTYKEEADEQTGMREKVIVE
SKDKTKNPSVLVKAKGKEDLVYNVPVGARLAIDEGDKIKAGQIIAKIPRAAGKTRDITGG
LPRVTELFEARNPSNPAVVTEIDGVISYGVIKRGNREIIVTPKEGAERRYLVPLTRFILV
QNNDFVRAGSPLSDGAITPSDILKIKGPTAVQEYLVNEIQDVYRLQGVKINDKHIECIVR
QMMQKVQILEPGDTQFLQGQNVDRFVFRHENDLILDQKVITDAGDSEKYKAGMILSARAL
RDENSSLKRRDMKLMKVRDAQAAVSSSNLQGITQASLGTESFISAASFQETTKVLSEASI
RAKVDTLDGLKENVIVGHLIPAGTGLRRYKDILVTSKDELKAIEAKKEAAEIAEAKEKVE
AAN
NT seq
4332 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttaaaaagactagaaagctgaatagcgatttccaaaaagtaaccatctcacta
gcctcacctgagtcaatcttagaggggtctaatggcgaggtaacacaaccggaaaccatc
aactaccgtacctacaaacccgaaatgggcggtttgttttgcgagcgtatcttcggtcct
acaaaggactgggagtgccattgcggtaaatacaagcgtattcgttacaaaggcatcatt
tgcgatcgctgtggtgtagaagtaacggagaaaaaagtacgtcgtgagcgtatgggccac
atcgaattagtggttcccgtggcacacatctggtacttccgtagcttaccgaacaaaatc
ggttatatgctaggtttgtctacgaagaaattagaccaagtaatttattacgagcgtttc
gtggtagttcaaccaggtatgtacgcggaagaaggaaagattggtagccaataccttgat
ttcttaacagaagacgagtacttagatatcttagacaaattaccgcgcgagaaccaacat
ttacctgatgaagatccacagaaattcatcgcgaaaatgggtgctgacgcgttaaatatg
ttgttaacacgcattgacttagacagcttatcggctgacttgcgtcactctgcggacact
gaatcctctcaacaacgtaaggctgaagccttgaagcgtttgaaagtggtagaagcgttc
cgtgagtcgatcggtcgtatcgataaccgtcctgagtggatgatcatcaaaatggttcca
gtcattccaccagaattgcgtccattggtgccattagatggaggtcgttttgcgacatct
gatctaaatgatctataccgtcgtgtgattatccgtaacaaccgtttgaagcgtttgatc
gagattaaagcgccagaggtaatcttacgtaacgaaaaacgtatgttgcaagaagctgtt
gatagcttatttgacaactcacgtaaagtaaatgcggttcgttctgaaggtaaccgtgcc
ttgaagtctctttctgatatgttgaaaggtaagcaaggtcgtttccgtcaaaacttatta
ggtaagcgtgtcgattattcaggtcgttcggttatcgtcgtaggtccagaattgaaaatg
cacgaatgtggtcttccgaaggatatggcggctgaattattcaagccgtttgttatccgt
aagttgatcgagcgtggtatcgtgaagacggttaagtctgcgaagaaaattgttgatcgt
aaggatccagtggtttgggatattttggaaaatgtcatgaaaggacaccccgttctttta
aaccgtgctcctactcttcaccgtttaggtatccaagctttccaaccgaaattaatcgaa
ggaaaagcgatccaattgcacccattaacgtgtacggcctttaacgccgatttcgatggt
gaccagatggcggttcacgttccactaggacatgaagcgattttggaagcctcattatta
atgcttgcatcgcataacatcttgaacccagcgaatggtgcgcctattacagtaccatct
caggacatggtgttaggtttatattatgtaactaaaggtcgtaagtcaactcctgaccac
aaggtagagggagaaggacaccgtttctacggatttgaggaggttgttatcgccttgaac
gagaagaaattatctaagcacgcgaacattgtagtgaaagctaccgttcgtaaagacgat
ggtacattggtagaggaaatggtggaaactgttgctggccgtgtattattcaacttatgt
gttcctacagccgtaggttatatcaatgagttattgacgaagaagaaattgcaacaaatc
atctcacacgttcacaagatctgtggtatggctcgtacagcgcaattcttagatgatatc
aaagaattaggtttccaacaagccttccacggtggtttatcgatgggtattggcgatgtt
caaattccggcggagaaagcttcattagtgaagaaagcacaggaagatgttcaagcggtt
tgggacaactacttaatgggtttaatcacagataacgagcgttacaacgcagttattgac
atctggactaaagtgaactcgaaaattaccgagactttgatgaagcagatggaagaggat
aaccaaggatttaacgcgatctatatgatgatgcactccggagcccgtggttctcgtgag
caaattcgtcaactaggtggtatgcgtggtttgatggctaagcctcagaagaacttacaa
ggttcggtaggtgaaatcatcgaaaacccaatcctttctaactttaaagaaggtcttgac
gtattagagtactttatctcgactcacggtgcgcgtaaaggtttggcagatactgccttg
aaaacagccgatgcgggttacttgactcgtcgtttacacgacgtagcgcaagacgtgatc
gtgaacgaagaagattgtggtaccttacgaggtatcgaggtgttcccattgaaagacaac
gaggagatcatcgagccattatctgagcgtatcttaggtcgtgtgtctattcacgatgtg
tacgatccgatcacaaatgagttaatcgttgcttcaggtgatgaaatcaacgaagcgatc
gcaacgaaaatcgatgagacagcgatcgaatcagtggagattcgttcggtattaacgtgt
gagactttgagtggtgtgtgtgcgaaatgttacggacgtaacttagctacagctgcgatg
gtaaacttaggagaagcggtaggtgtaattgcctctcaatcgattggtgagccaggtaca
cagttaacattacgtacgttccacgtgggtggtacggcacaaaacgtttccttagatgcg
agcgtaaaagcgaaatttgacggggtgattaacttcgaagaagttcgttctgtaagctct
acagatgcagatggaaatccagtagaaatcgtgatgggtcgttctggtgaggttcaaatt
gtgaacccagcgaacaaacaaatcttgatctcttctaacattccttatggttcattctta
cgcgttaaggaaggccaagcggtgaaaaaaggagacgaaatctgtgcttgggatccatac
aatgcggttatcctttctgaagctgaaggtaaaattgaattcgaagcaatcgaagaaaac
aatacttacaaagaggaagcggatgagcaaacaggtatgcgtgagaaggtcattgtagaa
tcgaaagataagacaaagaacccatccgtattagtaaaagcaaaaggtaaagaagattta
gtatataacgttccagtgggtgcgcgtttagcgatcgacgaaggagataaaatcaaagcg
ggtcaaattatcgctaagattcctcgtgcggcaggtaaaactcgtgacattacgggaggt
cttccacgtgtaacggaattattcgaagcacgtaacccatcgaatccagctgttgtaact
gaaattgatggcgttatttcttacggtgtgattaagcgtggtaatcgtgagattatcgtg
acaccgaaagaaggagctgagcgtcgttacttagtacctttgacacgattcatcttagta
caaaataatgacttcgtgcgtgcaggttctccactttctgatggtgcgattacaccttca
gatatcttgaagatcaaaggacctacagcggtacaagaatacttagtgaacgagatccaa
gacgtataccgtctacaaggtgtgaagatcaatgataagcacatcgagtgtatcgttcgc
caaatgatgcaaaaagttcagattttagagccaggtgatacgcaattcttacaaggtcaa
aacgtagatcgtttcgtattccgtcacgagaacgacttgatcttagatcagaaggtgatc
actgatgcgggagactctgagaaatacaaagcaggtatgattctttctgctcgtgcttta
cgtgatgagaactcttcgttaaagcgtagagatatgaagttaatgaaggtacgtgatgcg
caagcagccgtttcttcttctaacttacaaggtatcacgcaagcttcgttaggaactgag
tcattcatctccgctgcgtcgttccaggaaactacgaaagtactttctgaagcgtcgatt
cgcgcgaaagtggatacgttagacggcttgaaagagaacgtaatcgtaggtcacttgatt
ccagcaggtacaggtcttcgtcgctacaaagacattttagttacatcgaaagatgagcta
aaagctatcgaagcgaagaaggaagctgctgaaatcgctgaagcgaaagaaaaagtagaa
gctgcaaactaa
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