Arenibacter antarcticus: KCTC52924_00343
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Entry
KCTC52924_00343 CDS
T10841
Symbol
rho
Name
(GenBank) Transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
aanr Arenibacter antarcticus
Pathway
aanr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCTC52924_00343 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aanr03021
]
KCTC52924_00343 (rho)
03019 Messenger RNA biogenesis [BR:
aanr03019
]
KCTC52924_00343 (rho)
Transcription machinery [BR:
aanr03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
KCTC52924_00343 (rho)
Messenger RNA biogenesis [BR:
aanr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
KCTC52924_00343 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
OB_RNB
NACHT
AAA_25
Mor
AAA_22
Motif
Other DBs
NCBI-ProteinID:
XHP72613
LinkDB
All DBs
Position
382000..383685
Genome browser
AA seq
561 aa
AA seq
DB search
MFEISDLKSKKLPELQEIAKGLNVAKFKTLKKLDLVYQILDVQASNPKIVQENTPATIPE
DNTPKVKRSRVVKEKPAPVVKNDPAPIKSEGENVVVEEKKREIPSKPPTEENKQEKTKPV
RNPRVQNTAGPIKREHQKSSAQQNTTHQNTSQPNKPQHKKSPQHQKSTVDKINSNFDKDL
KNKYKEPEFEFDSIIESEGVLDIMQDGYGFLRSSDYNYLSSPDDIYVSQSQIRLFGLKTG
DTVLGNVRPPKEGEKYFPLIKVNRINGIDPQIVRDRVSFEHLTPLFPQEKFNLAERQSTI
STRIIDLFSPIGKGQRGMIVSQPKTGKTMLLKDIANGIAANHPEVYQIILLIDERPEEVT
DMQRNVRGEVVASTFDKEATEHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTV
QPASGKVLSGGVDANALHKPKRFFGAARNIEGGGSLTIIATALTETGSKMDEVIFEEFKG
TGNMELQLDRKISNRRIFPAIDLTSSSTRRDDLLLDENTIQRMWIMRKYLADMNPVEAME
FIERRFKQTKNNEEFLLTMNQ
NT seq
1686 nt
NT seq
+upstream
nt +downstream
nt
atgtttgagatttcagatttaaaatcaaaaaagcttcctgagcttcaggaaatagccaaa
ggcctaaatgtagccaagtttaaaaccttgaaaaaactagatttggtctaccaaatattg
gacgtacaggcttcaaacccaaagattgttcaagaaaacactcctgcaaccataccagaa
gataatactcctaaggtaaagcgttcgcgagtcgttaaagaaaaacctgctccagtggtg
aaaaatgatcccgccccgatcaaatcggaaggtgaaaatgtggtagtcgaagaaaagaaa
cgtgagattccatcaaaaccacccacagaggaaaacaaacaggaaaaaactaagcctgta
agaaatcctcgcgtgcaaaacaccgctggtcctataaaaagggagcatcaaaaaagttct
gcccagcaaaacaccactcaccagaacacttcccaacccaacaaaccacagcataaaaaa
agcccccaacatcaaaagtcgaccgttgacaaaatcaacagtaattttgataaggattta
aaaaataaatacaaggaaccagaatttgaattcgatagtattattgaaagcgaaggggtc
ttggatattatgcaagatggttacggatttttaagatcttcggattacaactacctttct
tctccagatgatatttatgtatcccagtctcaaataagattatttggactaaaaactggc
gatactgtacttggaaatgtacgtccaccaaaagaaggcgaaaagtattttccacttata
aaggtgaatagaataaatggaattgaccctcagatagtaagggatagggtttcatttgaa
cacttgacccccttattcccacaggaaaaatttaatcttgctgaaagacaaagcaccatt
tccacgagaataattgatttgttctctcctattggaaaaggacaaaggggtatgattgtt
tcccagcctaaaactggtaagaccatgctcttaaaggatattgccaatggtattgcagcc
aatcatcctgaagtgtaccaaattattcttttgatagatgaacgtcctgaggaagttaca
gacatgcagcgtaatgttcgcggtgaggtcgttgcttctacttttgacaaggaagctaca
gaacatgtaagagttgccaatattgttttagaaaaagcaaaacgattggtagaatgtgga
cacgatgtggttatcttattagattcaattacacgacttgcccgagcgtacaataccgtt
caacctgcctctggaaaagtccttagtgggggtgtggatgccaatgcgcttcacaaacca
aagcgtttctttggtgcagcacgtaatattgaaggaggaggctccttaaccattattgct
acagcacttaccgaaactgggtctaaaatggatgaagtgatctttgaagaattcaaggga
actggtaatatggaattgcaattggatagaaaaatatcgaatagaagaattttcccagcc
atcgaccttacctcatcgagcaccagaagggacgacctattattggatgagaataccatt
cagcgtatgtggatcatgagaaagtatttggccgatatgaatcctgtagaagccatggaa
tttatagaacgacgttttaaacaaaccaagaacaacgaagagtttttactgaccatgaat
cagtag
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