Arenibacter antarcticus: KCTC52924_00960
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Entry
KCTC52924_00960 CDS
T10841
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
aanr Arenibacter antarcticus
Pathway
aanr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
KCTC52924_00960 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
aanr03400
]
KCTC52924_00960 (mfd)
Enzymes [BR:
aanr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
KCTC52924_00960 (mfd)
DNA repair and recombination proteins [BR:
aanr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
KCTC52924_00960 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
RecG_dom3_C
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
XHP73219
LinkDB
All DBs
Position
1102743..1106138
Genome browser
AA seq
1131 aa
AA seq
DB search
MTKSFLPQLFAQSPQLRKLQTIIADSQNNTTPGEPSITNLKGLTGSSLSFVVAEAFEKAN
IPFLFVLSDKEEAAYYLNDLEQLIGEKDALFYPGSYRRPYQIEETDNANVLLRAEVLNRI
NSRKKPAVIVTYPDALFEKVVTRRELEKNTLKIKLDDTLSLDFLNEVLFEYKFKRVDFVT
EPGEFSVRGGIMDVFSFSHDEPYRIEFFGDEVDSIRTFDVETQLSNQKVKKITIIPNVEN
KFLDENRESILKYIAPNTLIVSKNLNHLFDRLDSFFEKAEEAFGKLSNEIKRAKPLELFA
NSELIQQQLGSFKVLEIDGNKDSNSGDTILFNTQPQPSFNKKFDLLIDNLNQNHTNGYVN
YIFCATDQQAQRFHDIFEEVDKEVHYKTIVYPLYQGFLDSDLKIACYTDHQIFERYLKFH
LKNGYAKKQAITLKDLNKLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLMYGDRDI
LYVSIHSLHKISKFNGKDGAPPKIYKLGSGAWKKIKDKAKSRVKKIAFDLIQLYAKRRTE
KGFQYGPDSYLQLELEASFIYEDTPDQTKSTEDIKKDMENERPMDRLVCGDVGFGKTEVA
IRAAFKAVDNGKQVAVLVPTTILAFQHHRTFTERLKDMPVTVDYVNRFRTAKEKKETLAN
LEAGKVDIIIGTHQLVNKNVKFKDLGLLIVDEEQKFGVSVKDKLKSIKENVDVLTLTATP
IPRTLQFSLMAARDLSVINTAPPNRYPIESEVIRFSEETIRDAISYEIQRGGQIFFIHNR
IENIKEVAGMIQRLVPDAKIGIGHGQMEGKKLETLMLAFMNGEFDVLVSTTIVESGLDVT
NANTIFINNANNFGLSDLHQMRGRVGRSNKKAFCYFITPPYEVMTNDARKRIQALEQFTA
LGSGFNIAMKDLEIRGAGDLLGGEQSGFINDIGFDTYQKILAEAIDELKENEFKDLYEEV
KGKPKVYVKDTQIDSDFELLFPDNYINNVTERLNQYTQLNQVKDEAALQKFESDLKDRFG
ELPPQAVDLLNSVRIKWIANSIGLEKIVMKKGKMIGYFIADQQSNFYQSTQFTTVLRFIQ
SNPKLAKLKEKETRNGLRLLLVFEQIKTLDKAFKAIQVLSPERLNAEIKST
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
ttgacaaaatctttcttgccacaactgtttgcacagtctccgcaactgcgaaaactgcag
acgattattgccgattcccaaaataacactacaccaggagaaccttcgataaccaaccta
aaaggtctaactggatcctctttatcctttgtagttgccgaggcctttgaaaaagccaat
attccatttttatttgtgctttcggacaaggaagaagccgcctactacttaaacgatttg
gagcagctaataggtgaaaaggatgccctattttatccgggcagctataggaggccctac
caaatagaagaaacggacaatgcaaatgtactgttacgtgccgaagtccttaaccgtatc
aactctagaaaaaaaccagccgttattgtcacttacccggatgcgctttttgaaaaagtg
gtcaccagaagggaattggaaaaaaatactttaaaaataaaactggacgacacgctttcg
ctcgattttctgaacgaagtattgttcgaatacaaatttaagagggtcgattttgttacc
gagccgggagaattttccgtgcggggtggaattatggacgtattctccttttcgcatgat
gaaccttaccggatcgaatttttcggagacgaagtagacagtatcagaacctttgatgta
gagacacaattgtctaatcaaaaggtaaagaagattaccattatccccaatgtagaaaat
aaattcctggatgaaaacagggaaagcatactgaaatacattgcaccaaatactcttata
gtaagcaaaaacctcaaccaccttttcgataggctcgattcgttttttgaaaaagcagag
gaagcgttcggcaaactatccaatgaaataaagcgggctaaacccttagagctttttgca
aattcggaattaatacaacaacagttggggagttttaaggtattggaaatagatgggaat
aaagattccaattccggggacaccattctatttaatacacaacctcaaccttcgttcaat
aaaaagtttgatcttttaattgataatctaaaccaaaatcatactaatggatatgtaaat
tacattttctgtgctacagaccaacaggcccaacgcttccatgatatttttgaggaagtg
gacaaggaagtgcattacaaaaccattgtttatcccctttaccaaggatttttggatagc
gatctaaaaattgcctgctacaccgaccatcaaatttttgaacgatacctgaagttccat
ctgaagaacggatatgctaaaaagcaggccataaccctaaaagacctgaacaaactggaa
attggggactatgtaacccatatagaccacggtataggtaaatttggcggacttcaaaaa
atagatgtagaaggcaaaaaacaggaggccataaaattgatgtacggggatcgtgatatc
ctttatgtaagcatacattcccttcataaaatctccaaattcaatgggaaggacggggct
cccccaaaaatatacaagctaggttcgggcgcatggaaaaaaattaaggacaaggccaaa
tcgcgtgtaaagaaaattgcgttcgacctcatccaactctacgcaaaacgccgaacggaa
aaaggttttcagtacggccctgacagttatctacagctcgaattggaagcctccttcatc
tatgaagatacccccgaccaaactaaatctaccgaggacattaaaaaggacatggaaaat
gaacgtcctatggaccgacttgtttgcggagatgtgggctttggaaagactgaggtggct
atacgtgccgcctttaaagcggtagacaacggtaagcaagttgctgtcctagtaccaacc
accattctggccttccaacatcaccgtacttttacagagagactgaaagatatgcctgtc
accgtagactatgtcaaccgttttaggaccgcaaaagaaaaaaaggagacccttgcaaat
ttggaagctggtaaggtcgacattatcattggcacccatcaattagtaaacaaaaatgta
aagtttaaggatttaggactcttgatagtagatgaggaacaaaagtttggggtatcggtt
aaggacaaactaaaatctatcaaagaaaatgtagatgtgcttactcttaccgccactccc
attccaagaacccttcaatttagcctgatggcggccagagacctttctgtcattaatacc
gcaccaccaaataggtatccaattgagagcgaggtaatccgttttagcgaagagaccatt
agggatgccatttcttatgaaattcaacgcgggggacagatattttttatccacaatagg
attgaaaacatcaaggaagtagcaggcatgatacagcgtttggtcccagacgctaaaata
ggtattggtcatggacaaatggaaggaaaaaaattggagaccctaatgttggcctttatg
aatggggaatttgacgtattagtatccaccaccattgtagaaagtgggttggatgtcacc
aatgcaaataccattttcattaacaatgccaataattttggattgagcgatctacaccaa
atgcggggccgggtaggccgaagtaacaaaaaggcattctgttattttattacccctccc
tatgaagtcatgaccaacgatgccagaaagcgaattcaggccttagagcaatttacagcg
ttgggaagtggctttaatattgccatgaaagatttggaaattcgcggagccggggatctc
ctcgggggtgaacaaagcggatttatcaacgatattggatttgatacctaccaaaaaata
ttggcagaggctattgatgagcttaaagaaaatgagtttaaggatctctatgaagaggta
aaaggaaagcccaaggtttacgttaaggatactcaaatagattcagattttgaactgctt
ttcccggacaattatatcaacaatgttaccgaacgcctcaatcagtatacccaacttaac
caagtaaaggatgaggctgccttgcaaaaatttgaatcggacctaaaagaccgctttggg
gaattgccaccccaagcagtggatttattgaactcagtccgaattaaatggattgccaac
agtataggtttggagaaaatcgtcatgaaaaaaggtaaaatgataggttattttatcgca
gatcagcaatcaaatttctaccagagcacacagttcactacggttttaagatttatccaa
agcaatcctaagctcgcaaaactaaaggaaaaagaaactcgcaacggactccgtctttta
ttggtgtttgaacaaataaaaactttggataaggcctttaaagccatacaagtcctaagt
cccgaacgattaaatgcggaaattaaatccacctaa
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