Arenibacter antarcticus: KCTC52924_01343
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Entry
KCTC52924_01343 CDS
T10841
Symbol
rnr
Name
(GenBank) Ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
aanr Arenibacter antarcticus
Pathway
aanr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KCTC52924_01343 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aanr03019
]
KCTC52924_01343 (rnr)
03016 Transfer RNA biogenesis [BR:
aanr03016
]
KCTC52924_01343 (rnr)
Enzymes [BR:
aanr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
KCTC52924_01343 (rnr)
Messenger RNA biogenesis [BR:
aanr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
KCTC52924_01343 (rnr)
Transfer RNA biogenesis [BR:
aanr03016
]
Prokaryotic type
tRNA degradation factors
KCTC52924_01343 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
OB_Dis3
S1
Rho_RNA_bind
Ig_TRAPPC9-Trs120_4th
Motif
Other DBs
NCBI-ProteinID:
XHP73599
LinkDB
All DBs
Position
complement(1590725..1592914)
Genome browser
AA seq
729 aa
AA seq
DB search
MSKGKKSTKNHRNNEITKGIFTVLEKEPQKSFNYKQIAEKIGIVDAHDRNNLIKRLVQLK
EKKRILEEGIGNYKAIPSTKTYHTGTVDITGRGNAYIVVEGMDDDIFVPFNKLKRAFHKD
EVEVYIFPKRKGKKLEGEITKVVSRHKTSFVGILDMQKDFGFVRPTDYRMYTDIFVPKNK
LSTAEDGDKVIVEIKEWPDNADSPFGTIVQVLGKPGEHNTEIHSILAEYGLPYEFPVEVE
MFANTLDTSIKEEEIAKRRDMRDSLTFTIDPKDAKDFDDALSFTVLENGNYEIGVHIADV
SHYLTPDTLLDEEAYNRATSVYLVDRVVPMLPEVLSNNACSLRPNEEKYTFSAVFEIDDK
AVIKSEWFGRTVTESNERFAYEEAQHIIETQEGNISEEISIRDAAYQVDGEVVQATLTMD
RLAKIMRSQRMEEGALSFDKVEVRFNLNEESEPVGVYFKESMDANKLIEEFMLLANRRVA
RFIGKQKPEKTFVYRVHADPDEDKLMALNVIISRFGHNLDFKDKKSISASLNKLLEDVKG
KKEQNLVDTLAIRSMSKAIYTVDNIGHYGLAFDYYTHFTSPIRRYPDIMVHRLLQHYLDG
GATPKAEPYEEKCKHSSNMEGLAANAERDSIKYMQIKFMEDHKDSEFVGVISGVTEWGLY
VEIIENKCEGMVRIRDIKDDYYTFDDKEYAIVGEKTKKTYQLGDEVVVMVKSTDLVKRHL
DFSLLGKKD
NT seq
2190 nt
NT seq
+upstream
nt +downstream
nt
atgtcaaaaggtaaaaagagtactaaaaatcacagaaataacgaaattaccaaaggtatt
ttcactgttcttgaaaaggagccgcaaaaatcctttaactataaacaaatagctgaaaag
ataggtatagtagatgcccacgatagaaataatctaattaagaggctggtacaactaaag
gaaaagaaaagaatactggaagagggaatagggaattataaggccattcccagtaccaaa
acctaccatactggtaccgtggatattacgggacggggcaatgcttatattgttgtagaa
ggtatggatgatgatatttttgttccttttaataaattaaagagggcatttcataaagat
gaggtagaggtatatatctttccaaaaagaaaaggaaaaaaattagagggagagattact
aaggtagtatcccgacataaaacttcctttgttggtattttggatatgcaaaaggatttc
gggtttgtacgtccaaccgattatagaatgtacacggatatcttcgtcccaaagaacaaa
ttatctactgcagaagatggggataaggtaatagtagaaataaaagagtggccagataat
gccgactccccctttggtacgatagtacaggtattgggaaaaccaggggagcacaatacg
gaaattcattcaattttagcagaatacggacttccttacgagtttcctgtggaagtggaa
atgttcgccaataccttggatacttccattaaagaagaggaaatagcgaaacgaagggat
atgcgagatagccttacttttactattgatcctaaggatgccaaggattttgatgacgcg
ctttcctttactgtattagaaaatgggaattatgagattggagtccatattgccgatgta
tcccattatttaacaccagataccctcttagatgaagaggcctataatagggcaacttct
gtttacttggtagatagggtagtcccaatgcttcccgaagtattgtctaacaacgcttgt
tccctaagaccaaacgaagaaaaatataccttttccgctgtttttgaaatagatgataaa
gcggttattaagagcgaatggtttggacgtacggtaaccgaatctaacgaacgatttgct
tatgaggaagcgcagcacattatagaaactcaagaaggaaatataagtgaggaaatttcc
attagggatgctgcttatcaagttgatggagaagtggtacaggctaccttgactatggac
agattggctaaaattatgcggtcccagcgaatggaagaaggagctttatcctttgataaa
gtagaggtgcgttttaatctaaatgaagaaagcgaaccagtaggcgtttattttaaggaa
tccatggatgccaacaaattgattgaggaattcatgttattggccaataggagggtagct
cggtttattggaaaacaaaagcccgaaaaaacctttgtataccgtgtacatgcagatcct
gatgaagataaattaatggccttgaatgtgataatttcacgttttgggcataatcttgac
tttaaggataaaaaatctattagcgcttctctaaataagcttttagaggatgttaagggg
aagaaggaacaaaatcttgtagataccttagccattcgcagtatgagcaaggctatttat
accgtagacaatataggtcattatggtctggcctttgattattacacccattttacttcc
ccgataaggaggtatccagatattatggttcataggttattacaacactatttggatggc
ggagctacaccaaaggcagagccatacgaggaaaaatgtaagcactcttctaatatggaa
gggttggccgccaatgcggaaagggattccataaaatatatgcagatcaaatttatggag
gatcataaagacagcgaatttgtgggggttatctctggggttacagaatggggactttat
gtagagatcatagagaataaatgtgaaggaatggtccgaattagagatataaaggatgat
tattatacatttgatgacaaggagtacgccattgttggtgaaaaaacaaaaaagacctat
caattaggggatgaagtggtagtaatggtaaagagcactgatcttgtgaaacgccattta
gatttttctctattgggaaaaaaggactaa
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