Arenibacter antarcticus: KCTC52924_02318
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Entry
KCTC52924_02318 CDS
T10841
Symbol
rpoB
Name
(GenBank) DNA-directed RNA polymerase subunit beta
KO
K03043
DNA-directed RNA polymerase subunit beta [EC:
2.7.7.6
]
Organism
aanr Arenibacter antarcticus
Pathway
aanr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCTC52924_02318 (rpoB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aanr03021
]
KCTC52924_02318 (rpoB)
03400 DNA repair and recombination proteins [BR:
aanr03400
]
KCTC52924_02318 (rpoB)
Enzymes [BR:
aanr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCTC52924_02318 (rpoB)
Transcription machinery [BR:
aanr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCTC52924_02318 (rpoB)
DNA repair and recombination proteins [BR:
aanr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCTC52924_02318 (rpoB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_2
RNA_pol_Rpb2_3
RNA_pol_Rpb2_7
RNA_pol_Rpb2_45
RNA_pol_Rpb2_1
AGA2
Biotin_lipoyl
Motif
Other DBs
NCBI-ProteinID:
XHP74557
LinkDB
All DBs
Position
2738566..2742375
Genome browser
AA seq
1269 aa
AA seq
DB search
MFTNQTERISFASAKNTPNYPDFLDIQIKSFQDFFQLETKSDERGNEGLYNTFMENFPIT
DTRNQFVLEFLDYFIDPPRYSIQECIERGLTHSVPLKARLKLYCTDPEHEDFETIVQDVY
LGTIPYMTPSGTFVINGAERVVVSQLHRSPGVFFGQSFHANGTKLYSARVIPFKGSWIEF
ATDINGVMYAYIDRKKKLPVTTLFRAIGFERDKDILEIFDLSEEIKVSNAGLKKVLGRKL
AARVLNTWHEDFVDEDTGEVVSIERNEIILDRDTVLEKDHIAEILDADVKTILLHKENNA
QSDYAIIHNTLQKDPTNSEKEAVEHIYRQLRNAEPPDEETARGIIDKLFFSDQRYNLGEV
GRYRMNKKLGLDIGMDKQVLTKEDIITIIKYLIELINSKAEIDDIDHLSNRRVRTVGEQL
SQQFGVGLARMARTIRERMNVRDNEVFTPIDLINAKTLSSVINSFFGTNQLSQFMDQTNP
LAEITHKRRLSALGPGGLSRERAGFEVRDVHYTHYGRLCPIETPEGPNIGLISSLSVFAK
VNPMGFLETPYRKVVNGKVNINDFIYLSAEEEEGMKIAQANIPMDEEGTITPEKIIAREE
GDFPVIDPLELDYTDVAPNQIASISASLIPFLEHDDANRALMGSNMMRQAVPLLKPEAPI
VGTGLERQVASDSRVLINAEGDGVIEYVDSQKITIKYDRTEDEKLVSFEEDSKTYELVKF
RKTNQGTSINLKPIVKKGYKVKKGQVLCEGYATENGELALGRNLVVAFMPWKGYNFEDAI
VISEKVVREDIFTSIHVDEYALEVRDTKLGAEELTNDIPNVSEEATKDLDEYGMIRIGAE
VKPGDILIGKITPKGESDPTPEEKLLRAIFGDKAGDVKDASLKASPSLRGVVIDKKLFSR
SVKDKRKRSEDKEELAKLELEYEVKFQQLKDVLVEKLFTLVNGKTSQGVLNDLGEEVLPK
GKKYTMKMLNAVDDFAHLVGGVWTTDKDCNILVTDLLHNYKIKLNDLQGNLRRDKFTISV
GDELPAGIMKLAKVYIAKKRKLKVGDKMAGRHGNKGIVSRIVRHEDMPFLEDGTPVDIVL
NPLGVPSRMNIGQIYETVLGWAGLKLGKKYATAIFDGASLDQINAYTDEAGIPRYGHTYL
YDGGTGQRFDQAATVGVIYMLKLGHMVDDKMHARSIGPYSLITQQPLGGKAQFGGQRFGE
MEVWALEAYGASATLREILTVKSDDVIGRAKTYEAIVKGETMPEPGLPESFNVLMHELKG
LGLDIRLEE
NT seq
3810 nt
NT seq
+upstream
nt +downstream
nt
atgttcacaaatcagactgaaagaataagtttcgcatccgctaagaatacgccgaattat
ccggatttcttggacattcagattaaatcgtttcaagatttttttcaacttgagaccaaa
tctgacgaaaggggcaatgaagggttgtacaacaccttcatggaaaactttccaattaca
gacaccaggaaccagttcgtactagaatttttagactattttattgatccacctagatat
tccatccaagaatgtatagagcgtggacttactcatagtgttccattaaaagcaagatta
aaattatattgtacagatcctgagcatgaggattttgaaacaattgtacaggatgtatac
ttaggtactattccttacatgactcctagtggtaccttcgttatcaatggtgctgaacga
gttgtagtttctcagttacaccgttctccaggggttttctttggtcaatcctttcatgca
aacggtacaaagttgtattctgccagggtgattccatttaaaggatcttggatagaattt
gcaacggatatcaatggtgttatgtacgcctatattgatagaaagaaaaaattacccgtt
actaccttgttcagagctattggctttgaaagggataaagacatattggaaatatttgac
ctttctgaggaaattaaagtttccaatgccgggttaaaaaaggtgttgggccgtaaattg
gcggcaagagtattgaacacatggcacgaagattttgtggacgaagataccggcgaagtg
gtttctatagaacgtaatgagattattttggaccgtgataccgttttggaaaaagatcac
atagccgaaattttggatgcagatgttaagaccatcctacttcataaggaaaataatgcg
cagagtgattatgctattattcataacacccttcaaaaggatccaacaaactcggaaaaa
gaggctgttgaacatatttaccgtcagttacgtaatgccgaaccgccagatgaggaaact
gcacgtggaattatagataaattgttcttttcagatcaacgttacaacttaggtgaagtt
gggcgttatagaatgaacaaaaaacttggtcttgatattggaatggacaaacaagtcctt
accaaggaagatattattaccattataaaatatttgatagaattgatcaattccaaagcg
gagatcgatgatattgaccacctttcaaaccgtagggtaagaactgttggagaacaattg
tcacaacaatttggtgtaggtcttgcccgtatggctagaacgatacgtgaacgtatgaac
gttcgtgacaacgaggtgtttaccccgatcgatttgatcaacgcaaagaccttgtcttct
gtgatcaactctttctttggtaccaaccagttgtcccagtttatggaccagaccaatccc
ttggctgaaattacgcacaagagaagattgtcagcattagggccaggaggtctatctagg
gaaagagcaggttttgaggtacgtgacgttcactatacccactacggaagactttgtcct
attgaaactcccgagggaccgaatattggacttatttcctcactttctgtgtttgcgaag
gttaacccaatgggattccttgaaacaccatatagaaaagtggtaaatggaaaggtgaac
attaacgatttcatatacctgagtgctgaggaggaagagggaatgaaaatagcccaagcc
aacatccctatggatgaggaagggaccattactccagagaaaattattgcaagagaagaa
ggtgatttcccagttatagatccattagaattggattatacagatgtagcaccaaaccag
attgcttctatttcagcatcgttgattccgtttttggagcatgatgatgccaacagggca
ttgatgggatctaacatgatgcgtcaggcagtaccgttgctaaaaccagaggctcctatt
gtaggaaccgggttagagcgtcaggtggcttctgattcccgagtattgataaatgctgaa
ggtgatggggttatagaatatgttgattctcaaaagattaccattaaatacgataggaca
gaggatgaaaaactagttagttttgaagaggattccaaaacctatgagttggtgaaattt
agaaaaaccaaccaaggtactagtattaaccttaaacctattgttaaaaaaggatataag
gttaaaaaaggacaagtactttgtgaaggatatgcaactgaaaatggagaactggccttg
ggtagaaacttggtagtggcatttatgccatggaagggatacaattttgaggatgctatc
gtaatttctgaaaaagtagttagagaggatatctttacttctatacacgtagatgaatac
gcgttggaggtgagggatactaaattgggagcagaggaattgactaatgatattcctaac
gtttctgaggaggctaccaaagatcttgacgaatacggtatgatccgtattggtgcagaa
gtgaagcctggtgatattcttattggaaagattactccaaaaggagaatctgatcctact
ccggaagaaaaattattacgtgctatttttggagacaaggcaggagatgttaaggatgct
tccttaaaagcttcaccttctttacgaggagtggttatcgataaaaagttattctctaga
tcggttaaggataagcgtaagcgttccgaagataaagaagaattggcgaaattagagttg
gaatacgaagttaaattccaacagctaaaagatgtattggtagagaagctgtttacattg
gtcaatggtaaaacttcacaaggtgtattgaacgaccttggggaggaagtacttccaaaa
ggaaagaaatacaccatgaaaatgttgaacgcagtggatgattttgcccatttggttggc
ggagtctggactacggataaggactgtaatatattggtaaccgatctattgcacaattat
aagattaaattgaatgaccttcaggggaaccttagaagggataagtttacaatttcagtt
ggggatgaattgcctgctggaattatgaaactggccaaagtttatatcgctaaaaagcga
aaattaaaggttggggataagatggcaggacgccacggtaacaaaggtattgtatctaga
attgtacgtcatgaagatatgccgttcttggaagatggaacaccagtagatattgtctta
aatccacttggggtaccttcccgtatgaacattggacagatttacgagactgttttagga
tgggccggattaaaattgggcaagaaatatgccactgcaatttttgatggtgcaagtttg
gatcagatcaatgcctacacggatgaagctggaattccgagatatggacatacgtatcta
tatgatgggggtactggtcagcgttttgaccaggctgcaacggtaggggtaatctatatg
ttgaaattaggacatatggtagatgataagatgcacgcacgttctataggaccttactcg
cttattacgcaacagccattaggtggtaaagcgcaatttgggggtcagcgatttggagag
atggaagtatgggccttagaagcctatggtgcctcggcaacccttagggaaatattaacg
gttaaatcagatgatgttattggtagggccaagacatatgaggccatcgttaagggagaa
accatgccagaacctggtttaccagaatctttcaacgtattgatgcacgaacttaaagga
ttaggtttggacattagattggaagaataa
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