Arenibacter antarcticus: KCTC52924_02319
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Entry
KCTC52924_02319 CDS
T10841
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
aanr Arenibacter antarcticus
Pathway
aanr03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
aanr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
KCTC52924_02319 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
aanr03021
]
KCTC52924_02319 (rpoC)
03400 DNA repair and recombination proteins [BR:
aanr03400
]
KCTC52924_02319 (rpoC)
Enzymes [BR:
aanr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
KCTC52924_02319 (rpoC)
Transcription machinery [BR:
aanr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
KCTC52924_02319 (rpoC)
DNA repair and recombination proteins [BR:
aanr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
KCTC52924_02319 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Apocytochr_F_C
Biotin_lipoyl
Biotin_lipoyl_2
RnfC_N
Motif
Other DBs
NCBI-ProteinID:
XHP74558
LinkDB
All DBs
Position
2742438..2746736
Genome browser
AA seq
1432 aa
AA seq
DB search
MARLKDNNTVKRFNKISIGLASPESILAESRGEVLKPETINYRTHKPERDGLFCERIFGP
VKDYECACGKYKRIRYRGIVCDRCGVEVTEKKVRRDRVGHINLVVPVAHIWYFRSLPNKI
GYLLGLPSKKLDMIIYYERYVVIQPGIAKGPEGEEIQKLDFLSEEEYLNILETIPQENQY
LEDSDPNKFIAKMGAECLIDLLSRIDLSELSYELRHKANTETSKQRKTEALKRLQVVEAL
RESQENRENKPDWMIMKVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLV
EIKAPEVILRNEKRMLQEAVDSLFDNTRKASAVKTESNRPLKSLSDSLKGKQGRFRQNLL
GKRVDYSARSVIVVGPEMKLSECGLPKDMAAELYKPFVIRKLIERGIVKTVKSAKKIIDR
KEPVVWDILENVLKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIRLHPLVCTAFNADFDG
DQMAVHLPLGPEAILEAQLLMLASHNILNPANGSPITVPSQDMVLGLYYMTKEKKSTPEV
KVKGEGLIFYSYEEVVIAFNEGRLDLNAGIKVRAKDFNEAGELVNQIIPTTVGRVLFNMV
VPEEAGYINEVLNKKSLRDIIGDILSVTDVPTTADFLDKIKTMGYEFAFKGGLSFSLGDI
IIPPEKHEMIADANTQVDGIMANYNMGLITNNERYNQVIDVWTSTNSMLTELAMKRIRED
KQGFNSVYMMLDSGARGSKEQIRQLTGMRGLMAKPKKSTAGGGEIIENPILSNFKEGLSI
LEYFISTHGARKGLADTALKTADAGYLTRRLVDVSQDVIINIEDCETLRGVQVEALKKNE
EIVETLGERILGRVSLHDVYDPISEELLLKAGQEIMESDVKKIMASPVEKVEVRSALTCE
AQKGICGKCYGRNLSTNKMVQRGEAVGVVAAQSIGEPGTQLTLRTFHVGGIAGNISEDNK
LEAKFGGIAEIEDLRTVKNQEAEGKGSEIVISRTSEIKVVDPKSGITLSTNNIPYGSQLF
IKNGDKVEKGQVICSWDPYNGVIVSEFPGQIAYENIEQGITYQVEIDEQTGFQEKVISES
RNKKLIPTLLIKNNKDEVLRSYNLPVGSHIMVDDGDKIKEGKILVKIPRKSAKSGDITGG
LPRVTELFEARNPSNPAVVSEIDGVVSFGKIKRGNREIIIESKLGEVKKYLVKLSNQILV
QENDYVRAGMPLSDGSITPEDILAIKGPSAVQQYLVNEVQEVYRLQGVKINDKHFEVVVR
QMMRKVRIQDPGDTIFLENQLVHKDDFIKENDDIFGQKVVDEAGDSVNLKPGQIISLREL
RDENSILKRTDKELVSARDAIAATATPILQGITRASLQTKSFISAASFQETTKVLNEAAV
SGKVDTLEGLKENVIVGHKIPAGTGMRDYDNIIVGSKEEYDEIMARKEELKF
NT seq
4299 nt
NT seq
+upstream
nt +downstream
nt
atggctagactaaaagataataataccgttaaaaggtttaataaaatttcaatcggtttg
gcctctccagaatctattttggcagagtccagaggtgaggttttaaaacccgaaactatt
aactatagaacgcacaaaccagagcgtgacggtcttttttgtgagcgtatttttgggcct
gtaaaggactatgagtgtgcttgtgggaaatacaagagaattcgttaccgcggtattgtt
tgtgatcgttgtggcgtagaagtgacagagaaaaaagtacgtagggatagggtaggacac
attaacttggttgttcctgttgcccatatctggtatttccgttccctgccaaataaaatc
ggataccttttgggattgccctccaagaaattggatatgatcatttactacgaacgatat
gtagtaattcagccgggaattgccaaaggtccggaaggagaggaaattcaaaaattggat
ttcttgagcgaggaggaatatctaaatattttggaaaccatccctcaggaaaatcagtat
ttagaagattccgatcccaacaagtttatcgcgaagatgggtgcagaatgtcttatagac
ctattgtctaggatagatttgagcgaattgtcgtatgaacttagacataaggccaatact
gaaacatctaaacagcgtaaaactgaagctttaaaaagacttcaagttgttgaggcccta
agagagtctcaagaaaatagagagaataaaccagattggatgatcatgaaggtcattcct
gttattcctccagaattacgtcctttggtgccgttagatggtggtcgttttgcgacttcg
gatcttaacgacctttataggagagttattattagaaataaccgtctaaaaagattggtt
gagataaaagcacctgaagtaattcttagaaatgagaaacgtatgcttcaggaagcggtg
gattccttatttgataatacacgtaaggcatcagctgttaaaactgaatccaatagaccg
ttaaagtcactttcggattcattaaaaggtaagcaaggacgtttccgtcagaaccttttg
ggtaaacgtgtggattattctgctcgttcggttattgttgttggacctgaaatgaaactg
tccgaatgtggtctgccaaaagatatggctgcagaactgtacaaaccttttgtaatccgt
aagttgattgaaagagggattgttaaaacagtgaaatccgctaaaaaaataatagacaga
aaagagcctgtagtttgggatattctggaaaatgtattgaaaggacatcctgtattattg
aacagagctcctactttgcaccgtttgggtattcaagcgtttcagccaaaactaatagaa
ggtaaggcaattcgtctgcatccattggtttgtacggcatttaacgcggattttgatggt
gatcaaatggcggttcaccttccgttgggaccagaagcaattctagaagcacaactgtta
atgttggcttcccataatattttgaacccggcaaatggttccccaattaccgtaccttca
caggatatggtcttgggtctatattatatgaccaaggaaaagaaatctacccccgaagtt
aaagttaaaggggaaggacttattttctattcctatgaggaagtagtaatagcctttaat
gagggacgtttagatcttaacgcgggcattaaggtgcgcgcaaaagattttaatgaagct
ggggagttggtgaatcaaattataccaacaaccgtaggtagggtcttgtttaatatggtt
gtaccagaagaagcaggatatatcaacgaagtattgaataaaaaatcgttaagggatatt
attggtgatattttaagtgttaccgatgtacctacaacggcggatttcttggataagatc
aagactatggggtacgaattcgcctttaaaggtggactttcctttagtttgggggatatt
attattccacccgagaaacacgaaatgattgctgatgctaacacccaagtagatggtatt
atggccaactataacatgggtcttattaccaataacgaacgttataatcaggtgattgat
gtttggacttccaccaactcaatgttgaccgaattggctatgaagcgaattcgtgaggac
aagcaagggtttaactcagtgtatatgatgttagattctggtgcaaggggttctaaggag
cagattcgtcagttgaccggtatgcgtggattaatggcgaaacctaaaaaatctactgct
ggtggaggggaaattattgaaaaccctattctatccaactttaaagagggattgtccatt
ttggaatactttatatctactcacggtgcgcgtaaaggtcttgcggatacggcgttaaaa
acggcggatgcgggttatctaacacgtcgtttggtagatgtttcacaagatgtcattatc
aatattgaagattgtgaaacgctaagaggtgtacaggtagaagcgcttaagaaaaacgaa
gaaatcgttgaaactttaggggaacgtatccttggaagggtttctttgcatgatgtttat
gatcctatttctgaggagttgcttttaaaagctggtcaagaaattatggaatcagatgtt
aagaagattatggcttctccagttgaaaaggtagaggttcgttcggcactgacatgtgaa
gcccagaaaggtatttgtggtaaatgttatggaagaaacttgtctaccaataaaatggta
caacgaggtgaagccgttggtgtagttgccgctcaatcgattggtgaaccagggacacag
ttaacccttagaaccttccacgtaggtggtattgctggtaacatttccgaagataataag
cttgaagctaaatttggaggtattgccgaaattgaggatctaagaacggtaaagaatcag
gaagcagaaggtaaagggtctgagattgtaatctccagaacatctgaaattaaggtcgta
gatcctaaatcgggtattaccctaagtaccaataacataccttatgggtctcaattattc
attaaaaatggtgataaagttgaaaaaggtcaggtaatttgttcatgggatccctataac
ggggtgatcgtatcggaattcccaggtcaaatagcctatgagaatatagaacaaggaata
acctaccaggtagaaattgatgagcagactggtttccaagagaaagtaatttcggaatcg
agaaacaaaaaactaattcctactttattgatcaagaacaataaggatgaagtgttgcgt
tcttataaccttccagttggttcacatatcatggtagatgatggtgataagattaaagaa
ggtaaaattttggttaagattccacgtaaatcggctaaatccggtgatattacgggaggt
cttccaagggtgaccgaattattcgaagcgcgtaatccgtctaaccctgctgtagtttct
gaaattgatggtgttgtttcattcggaaaaattaagagaggtaaccgagagatcattatc
gaatccaaattgggtgaggttaaaaaatacttggtaaaattatctaatcagatcctagtt
caggaaaatgattatgtacgtgcaggtatgccattgtccgatgggtccattaccccagaa
gatattttggcgatcaaaggaccatctgcagttcagcagtacttggtaaacgaagtgcaa
gaagtatatcgtttacaaggtgtgaagatcaatgacaagcattttgaggtggtagttcgt
caaatgatgcgtaaggtgcgtatccaagatccaggagataccattttcttggaaaatcaa
ttggtgcacaaagacgacttcatcaaagagaatgatgatatattcggacaaaaggtagta
gatgaagccggtgattcggtgaatctaaaaccaggtcagattattagtctacgagaactt
agggatgaaaactctatcttgaagcgtacagataaggaattggtatcggccagggatgcg
attgcagcaactgccacaccaattcttcaagggataacaagggcatcgctacaaacgaag
tcatttatatcggctgcttctttccaagaaacgaccaaagtattgaacgaagctgctgtt
agcgggaaagtggatacgttggaaggattaaaggagaatgtgatagttgggcataaaata
ccagcaggaacaggaatgagggattatgataatatcattgtgggctctaaagaggaatac
gatgaaatcatggctcgaaaagaagaactgaaattctaa
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integrated database retrieval system
