Argentina anserina (silverweed cinquefoil): 126783385
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Entry
126783385 CDS
T10558
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 15 isoform X1
KO
K12812
ATP-dependent RNA helicase UAP56/SUB2 [EC:
5.6.2.7
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03013
Nucleocytoplasmic transport
aans03015
mRNA surveillance pathway
aans03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
126783385
09122 Translation
03013 Nucleocytoplasmic transport
126783385
03015 mRNA surveillance pathway
126783385
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126783385
03041 Spliceosome [BR:
aans03041
]
126783385
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
126783385
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
126783385
Spliceosome [BR:
aans03041
]
Complex C
Other components
EJC/TREX
126783385
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
126783385
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
126783385
NCBI-ProteinID:
XP_050364801
LinkDB
All DBs
Position
2:23961739..23965918
Genome browser
AA seq
426 aa
AA seq
DB search
MGETREDVYDEELVDYEEDDEKAPDSAAKVNGESAKKGYVGIHSSGFRDFLLKPELLRAI
VDSGFEHPSEVQHECIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALILC
HTRELAYQICHEFERFSTYLPDLKVAVFYGGVPIKNHKDLLKNECPHIVVGTPGRILALA
RDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCK
KFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEAEKNRKLNDLLDALDFNQVVIFVKSVSRA
AELNKLLSECNFPSICIHSGMNQEERLKRYKGFKEGQNRILVATDLVGRGIDIERVNIVI
NYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSTSDSQVLNDVQERFEVDIQELPEQIDT
ATYMPS
NT seq
1281 nt
NT seq
+upstream
nt +downstream
nt
atgggcgagacaagggaggacgtctacgacgaggagctcgttgattacgaagaggatgac
gagaaggcccccgactccgctgccaaagtcaatggcgaatccgccaagaagggatatgtt
ggaattcacagctcaggattcagagatttcctcctaaagccggagcttctgcgcgctatt
gtcgactctggatttgagcatccttctgaagtacaacatgaatgcatcccacaagctatt
ctgggaatggatgttatctgccaagctaaatctgggatgggcaaaacagctgtctttgtc
ctgtctactttgcaacagattgaccctgtggctggtcaagtttctgctcttattctctgt
catactagggaattagcttaccagatttgccatgagttcgagaggttcagcacctacttg
ccagatctcaaggttgctgtcttctatggtggtgtccctatcaagaatcacaaagatttg
ctaaaaaatgaatgcccccacattgttgttggaactcctggaagaatactagcactggca
agagataaagacctttctttgaagaatgtgaggcattttatcctcgacgagtgtgacaag
atgcttgagtcacttgacatgaggagagatgtgcaagagattttcaagatgacgccccat
gacaagcaagtaatgatgttctctgcaacactcagcaaagagatccgaccggtttgcaag
aaatttatgcaagatcctatggaaatatatgttgacgacgaagccaagttgactcttcat
ggtctagtacagcactacatcaagttaactgaggcagaaaaaaaccggaagctgaatgat
ctcctcgatgccctggacttcaaccaggttgtcatatttgtcaaaagtgtgagcagagct
gcggagttgaacaagttactctcagagtgtaattttccctctatatgcatccattctggg
atgaaccaagaagaaaggttgaaacgctacaaaggattcaaggagggccagaacaggatt
ctcgtggctactgatttggttggcagaggaattgatattgaacgtgtcaatattgttatc
aattatgacatgccagactctgctgacacttacttgcacagggttggtagagctggtagg
tttggcaccaaagggctggcaattacattcgtatcatctacttcggactctcaagtcctt
aatgatgttcaggagaggtttgaggttgacatacaagagcttcctgaacagatcgatact
gccacatacatgccatcataa
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