Argentina anserina (silverweed cinquefoil): 126786489
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Entry
126786489 CDS
T10558
Name
(RefSeq) uncharacterized protein LOC126786489 isoform X1
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
126786489
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
aans03000
]
126786489
03019 Messenger RNA biogenesis [BR:
aans03019
]
126786489
04121 Ubiquitin system [BR:
aans04121
]
126786489
Enzymes [BR:
aans01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
126786489
Transcription factors [BR:
aans03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
126786489
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
126786489
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
126786489
Ubiquitin system [BR:
aans04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
126786489
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
Baculo_IE-1
Nab2-like_zf-CCCH_
RRM_Nup35
zf-UDP
Motif
Other DBs
NCBI-GeneID:
126786489
NCBI-ProteinID:
XP_050368283
LinkDB
All DBs
Position
3:27395327..27402396
Genome browser
AA seq
1037 aa
AA seq
DB search
MSDQGEKTCPLCAEEMDLTDQQLKPCKCGYEICVWCWHHIMDMAEKDDTEGRCPACRTPY
DKEKIVGDAKCERLVAEIHTERKKSQKTKVKPTTEGRKQLSSVRVIQRNLVYIVGLPLNL
ADEDQLLQRKEYFAQYGKVLKVSMSRTAAGVIQQFPNNTCSVYITYSKEEEAVRCIQNVH
GFLLDGRSLRACFGTTKYCHAWLRNVPCTNPDCLYLHEVGCHEDSFTKDEIISAYTRSRV
QQITGTLYPMQRRSGSVLPPPLDDYCNSSSASCGGPVNKTGSNNTGILVKDSPPNGSSVR
SIALPAAASWGTRGSNSQPPATPIYSNGDTKQKPDTVSCTVPFSSAAVSTGQASIVHSQA
GKRSTSNEDGQTIQVKGKPESPKIARQLSEDSQSMMSDKPVAPDEAPASLNISSQLSCPP
ASKDNNRGSSMQPTSTATNHDRQPSSSLHESESIVFNEEATQSVCSDISQMSIDRNSIPD
HSGVVRSNISASDHSYITSPQDQGLQQYCAEQPRESLLTAERAVTREQSNWLSESQSLPS
ISSEVEEDVLSFDNQRLKDPEVNRASYLPGLPNAVHVPNHSRSSLLPSEVYGAVYSSADH
LFVDNKFRDSSFLSSTNVPVQSNGYHENFISSASGLERPLEHSFLHRNEGLGQQGRRFLG
DTSNPDFSAVDKGESSIISNILSMDFDTWDDPIASPQNFSKFLGESDRKPGAQKLSSSWK
VPNNNQSRFSFARQEDSRNQAFDLQSSQNIIGRQAQNQGFQHGYSENRDICLDNFGIGNG
FPSSTFEDSENHTNNLLAFSSNKLSAGSRAQISAPPGFSVPSRAPPPGFTSHERLEHDYD
SLSGNLLHDNSSLLRNAYQPQPTGNIGSSGDIEFMDPAILAVGKGRPQGGLNNPVEMRSN
FPSQLSAFENDSRLQLLMQRSFSQQQNLRYPDFGDSYSHVNDSYGMSSRLLDQSQASNVS
PFAQLSIQPIRNNRSMSNGHWDGWNEVQGGNSMGMAELLRNERVNERLGYNKFYSGYEES
KFRMPNSGDLYNRTFGM
NT seq
3114 nt
NT seq
+upstream
nt +downstream
nt
atgagtgatcagggagaaaagacttgccctctttgcgcggaggagatggatttgacagat
cagcaattgaaaccatgcaaatgcggttatgagatatgtgtttggtgttggcaccacata
atggacatggctgagaaggatgacactgaggggcggtgtcctgcatgccgtaccccttat
gataaggaaaagattgtaggggatgccaagtgtgagagattggttgctgagatccatact
gagaggaagaagtctcagaagactaaagttaagccaaccactgaaggaagaaagcagctt
agcagtgtgcgagtgattcaacggaaccttgtttacatagttggattgcctcttaatcta
gcagatgaagatcagcttctgcagcgtaaagaatattttgctcagtatgggaaggtttta
aaggtttctatgtctcggacagcagctggtgtcattcaacaatttccaaataatacttgt
agtgtatatattacgtactcaaaagaggaggaagcggttcgctgtattcaaaatgtacat
gggtttctactggacggcagatctttgagggcttgctttggtaccacaaagtattgtcat
gcatggctaagaaatgtgccttgcaccaatcctgattgtttgtatctgcacgaggttgga
tgtcatgaggatagtttcactaaagatgaaataatttcggcatacactaggagtagagta
caacaaattaccggtactctataccctatgcagcggcggtcagggagtgtgttgcctcca
ccactagatgattattgtaatagcagttctgcttcttgtggagggccagttaataaaact
ggttcaaataatactggaatcctcgttaaagattctcctccaaatggaagctctgttaga
tctattgctcttccagctgcagcctcatggggtacacgtggttcaaattctcagccacca
gctacaccaatatattcgaatggagatactaaacagaaacctgatacagtcagttgcaca
gtgccattttcttctgctgctgtttctactggccaggcttctatagtgcatagtcaagca
ggaaagaggtcaacttcgaatgaagacggtcagactattcaagttaaaggtaaaccagag
tcaccgaaaattgcgagacaacttagcgaggatagtcaaagtatgatgtcagacaaacct
gttgcacccgatgaagctcctgcttctcttaatattagcagccagttatcttgtccacct
gcatccaaggacaataatagaggcagtagtatgcagccaactagcactgccaccaaccat
gatcggcagccttctagttccttgcatgaaagtgaaagtattgtttttaatgaagaagcc
acccaaagcgtatgctctgatatatctcaaatgagcattgatagaaattctattcctgat
cattctggtgtagtcagatctaatatttcagcttcagatcattcgtatataacatcgcct
caggaccaagggttacaacagtattgtgctgaacagcctagagaatctctattaacagct
gagagagctgtaacaagggaacaatccaactggttatcagagtcacaatcattacctagt
atatcttctgaggtggaggaagatgtactatcttttgataatcaaagactgaaggaccca
gaagtgaatcgtgcctcatatttgcctggtttgcctaatgcagttcatgttccaaatcac
tctaggtcttcattgctacctagtgaggtttatggtgcagtttattcaagtgctgatcac
ctttttgtagataataaatttagggacagttcatttctatcttcgaccaatgttcctgta
caatccaatggttaccatgagaattttataagcagcgcttctggtttagagaggcccttg
gagcattcatttcttcatcgaaatgaaggcctggggcagcaaggtcgaagattcttgggt
gatacatctaatccagatttcagtgccgtagacaagggagagagcagcataatctcaaat
atattgtcaatggactttgacacatgggatgacccaatagcctcacctcagaatttctcc
aagttcttgggtgaatctgatagaaaacctggagctcaaaaactttccagttcctggaaa
gtaccaaataataatcagtcaagattctcttttgcaagacaggaggattctagaaatcag
gcatttgatctacagtcatcccagaatatcattggacggcaagcacagaatcaaggattt
cagcatggctattctgaaaatcgagatatatgtttggataattttggaattggaaatggt
tttccttctagtacttttgaagattctgaaaatcataccaacaatcttttagcattctct
tcaaacaagctttctgcagggtcaagggctcaaatctctgctcctccaggattctcggtg
ccaagcagggcaccaccaccaggctttacttctcatgagagattggagcatgattatgac
tcactgtctgggaatcttttgcacgataactcctctctgctgagaaatgcctatcaacct
cagcccacggggaatattggtagctctggagatattgagtttatggatcctgctatattg
gcagttggaaaagggagaccgcaaggtgggcttaacaaccccgtagaaatgagatcaaac
ttcccttcgcagttgagtgcctttgaaaatgattcaaggcttcagctgttgatgcaaaga
tccttttcccaacaacaaaacctcaggtatcctgattttggggacagctattctcatgtc
aatgattcctatggaatgtcttcgaggcttttggatcaatctcaggctagcaatgtatcg
ccgtttgctcaactgtctattcaaccaatcagaaataacagatccatgtcaaatggccat
tgggatggatggaatgaagttcagggtggtaacagtatgggtatggcagagctcctgaga
aatgagagagtaaatgagagactaggatacaataagttctattctggttatgaagaatca
aaatttcggatgcccaattctggcgatctgtataacagaacctttggaatgtaa
DBGET
integrated database retrieval system
