KEGG   Argentina anserina (silverweed cinquefoil): 126786737
Entry
126786737         CDS       T10558                                 
Name
(RefSeq) WD repeat-containing protein VIP3
  KO
K12602  WD repeat-containing protein 61
Organism
aans  Argentina anserina (silverweed cinquefoil)
Pathway
aans03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:aans00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    126786737
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:aans03019]
    126786737
Messenger RNA biogenesis [BR:aans03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Ski complex
     126786737
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_WDR5 WD40 Beta-prop_WDR3_1st WD40_Prp19 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_WDR3_2nd Beta-prop_EML_2 WD40_Gbeta Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd EIF3I WDR55 WD40_MABP1-WDR62_2nd Beta-prop_WDR90_POC16_2nd Beta-prop_TEP1_2nd ANAPC4_WD40 Beta-prop_WDR36-Utp21_1st Beta-prop_RIG_2nd Beta-prop_EML WD40_MABP1-WDR62_1st Beta-prop_WDR75_1st Beta-prop_TEP1_C Beta-prop_WDR19_1st Beta-prop_EIPR1 Beta-prop_Aladin Beta-prop_IFT122_1st NBCH_WD40 WD40_RFWD3 Beta-prop_Vps41 Beta-prop_DCAF12 Beta-prop_SCAP WDR90_beta-prop_4th eIF2A Beta-prop_WDR35_TULP_N Beta-prop_SPT8 Beta-prop_NUP159_NUP214 Beta-prop_VPS8 Beta-prop_WDR41 Ge1_WD40 Beta-prop_HPS5 Tricorn_2nd Beta-prop_WDR11_1st Beta-prop_IFT140_1st PEP5_VPS11_N Cytochrom_D1 Beta-prop_ACSF4 DUF5711 Beta-prop_LRRK2 PD40
Other DBs
NCBI-GeneID: 126786737
NCBI-ProteinID: XP_050368617
LinkDB
Position
1:19823075..19824615
AA seq 317 aa
MKLAGLKSIDDAHDESVWAVTWVPATEARPALLLTGSLDESVRLWQPDDLVNRGQMTGHC
LGVASVAAHPSGYIAAAASLDSFVRIFDVDSNSTIASFEAPPSEVWQLRFNPQGTMLAAA
GGGSASVKVWDTSTWSLVATLSIPRPEGTKPAEKSSSKKFVLSVAWSPDGRRIACGSMDG
TISVFDTDRGKFLHHLEGHCMPVRSLVFSPVEPRLLFTGSDDQHVHMYDAEGKTQVGSMS
GHNGWVLSVDASTDGAALATGSSDRTVKLWDICMKAAVQTMSNHNDQVWGVAFRPGGMPG
RLASVSDDKSISLYDYS
NT seq 954 nt   +upstreamnt  +downstreamnt
atgaagctcgcaggactgaaatcaatcgacgacgctcacgacgagtcggtatgggctgtc
acctgggtccccgccaccgaagcccgacccgctttgttactaaccggctccctcgacgag
tccgttcgcctctggcaacccgacgacctggtcaaccggggtcagatgacgggccactgc
ctcggcgtcgcttccgtcgccgctcacccctccggctacatcgccgccgctgcttcgctc
gacagcttcgttcggatcttcgacgtcgactccaactccaccatcgctagcttcgaggcg
ccgccgtcggaagtctggcagttacggttcaatcctcagggtaccatgctagctgccgca
ggtggtggtagtgcctcagtcaaggtctgggacaccagcacgtggagcctggttgccaca
ttgtcgattcctcgcccagaaggaaccaagcctgcggagaaaagcagcagcaagaagttt
gtgctatcagttgcctggagtcctgatgggagacgcatagcttgtggctccatggatgga
actatttctgtgttcgacacagatcgtggcaagttcctgcaccacctggaaggccactgc
atgcctgtaaggtcacttgtgttttcccccgttgaaccacggttactcttcactggctca
gacgatcaacacgtccacatgtatgatgctgaggggaaaacccaggttgggtccatgtca
ggtcacaacgggtgggtgttgagtgtggatgcaagcacagatggggcagcccttgcaact
ggttctagtgatagaactgtgaagctgtgggatatttgcatgaaggcagctgtgcagaca
atgagcaaccataatgatcaagtctggggagtggcctttcgacctggaggaatgcctggt
agacttgctagtgtctctgatgacaagagcatctcactgtatgactattcctga

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