Argentina anserina (silverweed cinquefoil): 126787231
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Entry
126787231 CDS
T10558
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7
KO
K14409
protein SMG7
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
aans00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
126787231
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
aans03019
]
126787231
Messenger RNA biogenesis [BR:
aans03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
126787231
mRNA cycle factors
Common to processing body (P body) and stress granule
126787231
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
Motif
Other DBs
NCBI-GeneID:
126787231
NCBI-ProteinID:
XP_050369105
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Position
3:complement(21318759..21326539)
Genome browser
AA seq
910 aa
AA seq
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MITETDKMSAPSSWERAQRWFDKITELESRRRRSAQARVPSDPNAWQQIRENYEAIILED
HAFSEQHNVEYALWQLHYKRIEELRAHFSAAMASTGSNSTQGLKGTTRPDRIAKIRLQFK
TFLSEATGFYHDLIVKIRAKYGLPLGYFSEDSENRIVMDKDGKKSADVKKGLISCHRCLI
YLGDLARYKGLYGEGDSKTREYAAASSYYLQAASCLPSSGNPHHQLAILASYLGDEVVTV
YRYFRSLAVDNPFSTARDNLIVAFEKNRQSYSQLSGNANASALKEMPARLTGKSRGKGES
VPAKDKNSEVGLLRERSSSNQEKYKAFSIRFVRLNGILFTRTSLETFAEVLSAVSKGFSE
LLSSGAEETLFDADGIENGLVIVRLVSILIFTVHNVKKESEGQSYAEIVQRPVLLQNAFT
AVFELMGHVLERCVNLGDPTSCYLLPGILVFVEWLACCPDVAVGSEADENQSSFREKFWN
ACILLLNNLLSSVPMSLDDDGDETCFNNMSRYEEGETENRLALWEDFELRGFIPLLPAQT
ILDFSRKHPFGSDGQKEKLARVKRILAAGKALANMVKVDQKAIYFDSQAKKFVIGVEPPM
NSNYMPTSLGISNTNDNLEENKPEDTTNLGVPFQKPETTMDGDEEDEVIVFKPMVAEKRS
AWEIPQPLEPPVRSEEISLANNLKSLGLMGNGQVLKSEHVSSSLPFQHPVNGSTSSMFYS
HARAPEALLPFKVDIVASSGPPVEGLTLKTSSAFPAAIRKNPVSRPVRHLGPPPGFSHVP
AKQVNESMGENPLMDDYSWLDGYHVPSSTKGNMFSSSLNYSSHPNLHRVPNGNGLNGPVN
FPFPGKQGLSMPFQAENQKSQQDFHMLEDLKLHHEMQLQQQQQFVNGNPQLNPQPEQYQG
QPVWTGRYFV
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgatcacagagactgataaaatgtctgctccttcttcatgggagcgagcccaacgttgg
tttgacaagattactgagttggagagtaggcgacgcaggtctgcccaagcgcgagttccg
tcagatcccaatgcctggcaacagatacgtgagaattatgaagctataattcttgaggac
catgcattttcagagcagcacaatgttgagtatgctttgtggcagttacattacaagagg
attgaagaattgcgggcacacttcagtgctgctatggcttctacaggctcaaattcaaca
caaggtttgaagggtactactcgacctgatcggattgcaaaaataagattgcagtttaaa
acattcctttctgaagcaactggattttatcatgatttaatagtgaagatcagagcaaag
tatgggcttcctcttggctatttttctgaggattctgaaaatcgaattgttatggacaag
gatggaaagaaatctgctgacgtgaagaaaggtttgatatcatgccaccgctgtttgatt
tacttgggcgaccttgcacgctacaaaggactgtatggagagggggactctaaaactcgt
gagtatgctgctgcctcaagttactacttgcaagctgcatcttgtttaccatcaagtggg
aaccctcatcatcagcttgctatattggcctcttatttgggggatgaagtggtgactgtt
tatcgatattttcgtagcttggcggtggataatcccttttcgactgcaagagataacttg
attgtggcatttgagaagaatcgccagagttactctcaactgtctggtaatgctaatgct
tctgcactgaaagagatgcctgcacgattgactggaaaaagtagaggaaaaggggaatca
gtacctgctaaagataagaattcagaagtgggcctcttaagggaaagatcatccagtaac
caggagaaatacaaagcattttcaattcgttttgttcgtctaaatggcattttattcacg
cgcactagcctggaaacatttgcagaagtgctctctgctgtaagcaaaggtttttctgag
cttctatcttctggagcagaagagacgctttttgatgccgatggtattgagaatggactg
gtcattgtcaggctggtctctatactgatatttacagttcataatgtgaaaaaggaaagt
gaaggacagtcgtatgcagaaattgtacaacgtcctgttctactgcagaatgcatttact
gctgtctttgagttgatggggcatgtcttagagagatgcgtgaatctgggtgatccaact
tcctgttatctgttaccaggcattttagtttttgtagaatggttggcttgttgtcccgac
gtagcagtgggcagtgaggcagatgaaaatcagtcttcttttagagaaaaattctggaat
gcttgcatactcttgttgaataatctcttgtcatctgtcccaatgtccttagatgacgat
ggagatgaaacttgttttaataatatgagcagatatgaagaaggggaaactgagaatcgc
cttgctctgtgggaggattttgaattgagaggatttattccacttcttccagcacagaca
atattggatttctcgaggaagcatccttttggaagtgatggccagaaggaaaaattggcc
cgtgttaaaaggatcctggcggcaggcaaggctttggcaaatatggttaaggttgatcaa
aaagccatttattttgattcccaggcaaagaaatttgttattggtgttgagcctccaatg
aatagcaattatatgcctacttccttaggcatttccaataccaatgataatctggaagaa
aataagccggaggacaccacgaatttgggagttccatttcaaaagccagagacaaccatg
gatggggatgaggaagatgaagtgatagtttttaagccaatggtggctgagaagagatct
gcatgggaaattccccagcctttggaaccgccggtcagatcagaagagatatctcttgct
aacaacctaaagagtttggggttgatggggaatggacaagtgctgaaatctgagcatgta
tcaagttcacttccatttcaacatcctgtcaacggtagtactagtagtatgttctacagt
catgctagggctccagaagctttgttgccgtttaaggttgatattgttgcctcttctgga
ccacctgtggagggtttgacattgaagacatcatcagctttccctgctgctatccgaaaa
aatccagttagtcgacctgttaggcaccttggtcctccacctggttttagccatgttccc
gctaaacaagtcaatgagtcgatgggtgaaaatccgctgatggatgattacagctggttg
gatgggtatcatgtgccatcttcaactaaaggaaacatgttcagtagttcccttaactac
tcttctcatccaaatctccatcgtgttcctaatggaaatggcttaaatggaccagtgaac
tttccctttccgggtaaacagggcctatcaatgcctttccaagcagaaaatcagaaaagc
cagcaagattttcatatgcttgaggatctcaaacttcaccacgaaatgcagctgcagcaa
cagcaacaatttgtaaatggaaatccgcagttgaacccacaacctgagcaatatcaagga
cagcctgtctggacaggccgctattttgtgtga
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