Argentina anserina (silverweed cinquefoil): 126787334
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Entry
126787334 CDS
T10558
Name
(RefSeq) ATP-dependent RNA helicase DEAH12, chloroplastic-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126787334
Spliceosome [BR:
aans03041
]
Complex C
Other components
Step II factors
126787334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RBD_DEAH11
RRM_DEAH11
KH_DEAH11_2nd
KH_DEAH11_1st
KH_DEAH11
Helicase_C
DEAD
OB_NTP_bind
IBR
AAA_22
AAA_19
IBR_1
zf-RING_UBOX
IBR_2
zf-C3HC4
AAA_30
zf-RING_2
HA2_N
ABC_tran
AAA_16
Helicase_RecD
ResIII
T2SSE
AAA_29
Motif
Other DBs
NCBI-GeneID:
126787334
NCBI-ProteinID:
XP_050369222
LinkDB
All DBs
Position
1:complement(11541356..11548140)
Genome browser
AA seq
1726 aa
AA seq
DB search
MRGSHPVTSSRQPAGIPPRYPPPTHHQPRQFYKPYPRAAAPQRQRLPLERPNFAVDLLSD
RRDFPESFIKAVIDQCRSKPEGFRVTPTNCIAASLFYSQWCDALEAIVSLWESRLDRVHN
FLPRLDAKVSVPSDSVELEERLKALFAGRIRELIDGGEVNKCEERRQKLAREYERVQKMM
KKPQRRWEDVAAMVERARVELGLVERRIREFRSGMNCLLAHVEGKELEEYGEVGMKLFKF
DEIRDWSKIQRFMTRECRRLEEGLPIYAHRQQILEQINYQQVMVLIGETGSGKSTQLVQF
LVDSGIAAGGSIVCTQPRKIAANSLTKRVKEESSGCYEEDTVTSYQPSPEQQFKKVTYMT
DHCLLQCYMNNTNFSGISCIIVDEAHERTLSTDLLLALIKDLLGRRPQLRLIIMSATADA
EVLSHYFFKCEIFHVVGRNFPVDVRYAPPSTEGTASNVASYVSDVMRVAREIHKNEKEGT
ILAFLTSQMEVEWVCEKFITPGAIALPLHGKLSFEEQSNVFQNYPGLRKIIFATNLAETS
LTIPGVRYVIDSGMVKESKFEPGSGMNVLRVGRISQSSAKQRTGRAGRTEPGICYRLYSE
YDFQAMPPCQEPEIRRVHLGVAVLRILALGVKNLKEFEFIDAPCSEAIDMAMRNLVQLGA
VKRHNDVYELTLEGRRLVKLGVEPRLGKLILGCCHYNLRKEGLVLAAVMANASNIFCRVG
NDEEKLRSDCFKVKFCHRDGDLFTLLSVYKTWEALPRERKNSWCWENSINAKTMRRCQDT
VGELESCLKHELSIIIPSSWRWNGNVSTDCDKCLKKVILSSLAENVAMFLGYDQVGYEVA
LTGQHARLHPSCSLLVFGQKPSWVVFGELLSSSNQYLSCVTSIDFNSLSTLDPPPVFDVI
KMEDRKLQLKVLTGFGSCLLKRFCGKSNCYLHHLVSRVRTICRDDLISIKVDYYQNEIMV
FATSHNMDRVMNFVSDALECEKRWLRNECLEKCLYHGSGGLPPVALFGAGAEIKHLELRK
RCLTVDIFHSKLDDMDDKEFLSELEGSAFGCICGHHKLPSTGQESVDKGKGARLTFLTPD
AAQKAVELNESEFKGSILKVVPSQVGGDHKVFPLLAVRATVLWPRRPSNGFAIVKCDMDD
VLFMLEDFSNLLIGGRNIRCEPSKRDMDSLVISGINKDLSEKEIFDVLISATSKTILDFF
LVRGDAVENPPCGACEESLLKEISPYMPKQYSHSNCSVQVLQPEPKSPFMKALITFDGRL
HLEAAKALEQLDGKVLPGFFPWQKIMCQQLFHSSLSCPGPVYRVIKKQLDPLLESFTHLK
GVECNLEEYPNGSCRVKISANATKTIADLRRRVEVLVKGKTINNPSLTATVLQLLFSRDG
ISLMYSLQRETGTYIIFDRRKLNVQVFGSSDKVDMVTQKLVESLLNLHESKVLEVRLQGN
ALPPELMKEVVSRFGPDLRGLKEKVTGAEFTLNVCRQSILIHGSMELKQRVEEIIDEIAQ
TAGTGLTKRISKEADCPICLCDVEDGYRLVDCGHLFCRSCLVEQCESAIHNHDNSFPLCC
THEGCGSPILITDLRSLLSIEKLEDLFRASLGSYVALSGGTYRFCPSPDCSSVYQVVAPG
TEAEPFVCGACYAETCTMCHLEHHPYMSCEQYKEFKEDPDSSLKEWCKGKEHVKSCPVCR
YTIEKIDGCNHIECRCGKHICWVCLAHYGSSDECYGHLRSVHLAII
NT seq
5181 nt
NT seq
+upstream
nt +downstream
nt
atgaggggttcacacccggtcacctcttcccggcagcccgccggaatcccgccgcggtat
cctcctcctactcaccaccagccgcggcagttttataagccttatccacgcgccgccgcg
cctcagcggcagcgactgccgctggagcggccgaatttcgcggtggacctgctctccgac
cgccgcgacttcccggagtcgttcatcaaggcggtgatcgaccagtgccggtcgaagccg
gaggggttccgggtgacgccgacgaactgcattgcggcgtcgctgttctactcgcagtgg
tgcgacgcgctcgaagcgatcgtctcgctctgggagtcgcggctggaccgggtccacaat
ttcctcccccggctggacgccaaggtctcggtgccgtcggacagcgtggagctcgaggag
cggctgaaggcgctgttcgccggaagaatcagggagctgatcgacggcggcgaggtgaac
aagtgtgaggagaggcggcagaagctggcgagggagtacgagcgagttcagaagatgatg
aagaagccacagaggcgttgggaggacgtggcggcgatggtggagagggcaagagttgag
cttgggttggtggagaggagaatcagagagttcaggtctggtatgaactgtttgcttgct
catgtggaagggaaggagctggaggagtatggtgaagtagggatgaagctgtttaaattc
gacgaaattcgggattggagtaaaatccagaggtttatgacgagggaatgccgccgcctc
gaagagggcttgcctatttatgctcaccggcagcagattcttgagcagattaattatcag
caggtcatggtgttgatcggagagactggttcagggaagagtacacaattggttcagttt
cttgttgattctggaatagctgctggtgggtccatcgtatgcactcagcctcgcaagatt
gctgccaattcattgacaaagagggtcaaagaagaaagtagtgggtgttatgaagaagac
acagttaccagttatcagccatcgcctgaacagcagttcaagaaggtaacatatatgaca
gaccactgtttactgcagtgctacatgaacaatacaaatttttctgggatttcttgcatc
atagttgatgaggctcatgaaaggaccttgagtactgatctcctgttagcattgatcaaa
gatttacttggtcgaaggcctcagttacggcttattataatgtctgcaacagctgatgca
gaagtgctttcacattattttttcaagtgtgaaatctttcatgtagtgggaaggaacttt
ccagttgatgtaagatatgctcctccttctacagaaggaactgccagtaatgttgcttct
tatgtttctgatgtgatgagggtagcaagggagatccacaaaaatgagaaagaaggaaca
attcttgcctttttgacttcccagatggaagtcgaatgggtctgcgagaagtttataaca
cctggtgcaattgcattgccattgcatggtaaactttcttttgaagaacagtctaatgtt
tttcaaaattaccctggattaagaaaaattatattcgcgacaaatctggcagagacatcc
ctgacaattcctggtgtaagatatgtgattgattctggcatggtcaaagaaagcaagttt
gaacctggaagtggtatgaatgttctcagagttggcaggattagccagagttcagctaag
caaagaactgggcgtgctggaagaacggaacctggaatatgttatagactttactcagaa
tatgattttcaggcaatgcctccttgtcaggagcctgagatccgtagagttcatcttggt
gtagcagttctgaggattctggctttgggtgtcaagaatttaaaagaatttgaattcatt
gatgcaccttgttctgaagctatagacatggcaatgaggaatcttgttcagttaggagct
gttaagcgacacaatgatgtctacgagctaactttagaaggtcgccgcttggttaaatta
ggcgttgagcctaggcttgggaagcttattctcggctgctgtcactataacttgcgcaag
gagggccttgttcttgcggctgtaatggcaaatgcaagtaacatattttgcagagttggt
aatgatgaagagaaacttaggtcagactgcttcaaggtgaaattttgccatcgtgatggt
gacctctttacgcttctatcagtgtacaagacatgggaagcattgcctcgagaacggaaa
aattcgtggtgttgggaaaacagcatcaatgccaaaactatgagaagatgtcaagacact
gtgggggaactggagtcttgccttaaacatgaactcagtatcataattcctagcagctgg
cgttggaatgggaatgtttcaaccgactgtgataagtgcttgaaaaaggtgatactctct
tccctggcagaaaatgtagcaatgttcttagggtatgatcaagttggttatgaggtggcg
ttaactgggcagcacgctcggctgcacccttcttgttcattgctggtattcggccagaaa
cctagttgggttgtttttggtgagcttctctcaagttctaatcagtatttgtcctgcgtc
acttccattgattttaattctttgtctacacttgatcctcctcctgtgtttgatgtgata
aagatggaggatcgaaagttacaactgaaagtgttgactggttttggcagttgtttgctt
aaaagattttgtgggaagagcaactgttatctgcatcatcttgtgtctcgtgttagaaca
atctgcagagatgaccttatcagtattaaagttgattattatcagaatgagattatggtg
ttcgctacctcacataacatggatagggttatgaactttgtatccgatgcattggagtgt
gaaaaaagatggttgcgtaatgaatgcttggagaaatgcttatatcatggttctggtggc
ttgcctcctgttgcattgtttggtgccggagcagagatcaagcatctggagcttcgtaaa
aggtgtttgactgttgacatatttcattctaaactggacgacatggatgataaggagttt
cttagtgagcttgaagggtctgcctttggttgtatttgtggtcatcataaactccccagt
actgggcaggaaagtgttgacaaaggaaagggggccaggttgacgtttcttactcctgat
gcagcacagaaagctgttgaactaaatgaatctgagttcaaaggttctatactgaaggtt
gttccttcacaggttggaggtgatcataaagtttttccactccttgctgttagggctact
gttttatggcctcgcaggccaagcaacgggtttgcaattgttaaatgtgacatggatgat
gttctcttcatgcttgaagatttttctaaccttctaataggaggaagaaatattcgttgt
gaacctagcaaaagagacatggactctcttgttatcagtggaataaataaagacctttct
gagaaagaaatcttcgatgtgctaatttctgctactagtaagacaatcctggattttttt
ctggtgagaggggatgctgtagaaaatccgccatgtggtgcttgtgaagaatcactgcta
aaagaaatttcaccctatatgcctaaacagtactcccatagtaactgcagtgttcaggtt
ttgcagcctgaaccaaagagtcctttcatgaaagcattgataacatttgacggaagatta
cacctggaggcggcaaaagctttggagcagttggatgggaaagtattgcccggcttcttt
ccatggcaaaagatcatgtgtcagcagttatttcatagctctctgtcgtgccctggccct
gtatatcgtgtgataaagaagcagctagatcctttgcttgaaagttttacgcatctaaaa
ggtgtagaatgtaatctggaggagtatcctaatggttcctgcagagttaagatatcagcc
aatgctacaaaaacaattgcagatctgagaagacgtgtcgaggtgcttgtgaaggggaag
actatcaacaacccaagcctcactgcaactgttttgcagcttctgttttccagagatggc
atcagtctaatgtactcattacagcgagagacaggaacatatataatattcgataggcga
aaactcaatgtgcaggtctttggttcctcagataaagttgatatggttacgcagaaattg
gttgaatcccttttgaacctccacgaaagcaaggtgcttgaggtccgtcttcaaggaaat
gctttacctcccgagttgatgaaagaggttgttagcaggtttggtccagacctccggggg
ctcaaagagaaggtaacaggggctgagtttactctaaatgtttgccgtcaatccattctc
atccacggaagcatggagttgaagcaaagagttgaagagattattgatgagattgcacag
acagctggtactggtttgactaagaggataagtaaagaagccgattgtccaatctgtttg
tgtgatgttgaagatggttaccggcttgtggactgtggtcacttattttgtcgttcgtgt
ttggtggagcagtgcgagtctgcaatccataatcatgacaatagctttccattatgctgc
acacatgagggttgcgggtctccaattttgatcacagatctcagatctcttttgtcaatt
gagaagctagaagatctctttagggcttcactcggttcatatgttgctttgagtggtggc
acctacaggttttgcccgtctcctgactgctcttcggtctatcaggtagtagctcctgga
acagaagctgaaccatttgtttgcggtgcatgttatgcggagacatgtaccatgtgccat
ttagagcatcatccctacatgtcatgcgagcagtacaaggagttcaaggaagatccagat
tcttcactgaaggaatggtgcaaaggaaaagaacatgtgaagagctgccccgtatgcaga
tatacaattgagaagatagatgggtgcaaccatatagaatgtcggtgcgggaagcatatt
tgctgggtctgtctggcccattatggaagcagcgatgaatgttatggccacttgagaagt
gttcacttagcaatcatatga
DBGET
integrated database retrieval system
