Argentina anserina (silverweed cinquefoil): 126787582
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Entry
126787582 CDS
T10558
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH5
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
aans Argentina anserina (silverweed cinquefoil)
Pathway
aans03040
Spliceosome
Brite
Enzymes [BR:
aans01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
126787582
Spliceosome [BR:
aans03041
]
Complex C
Other components
Step II factors
126787582
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
HA2_N
S1
DEAD
AAA_22
AAA_19
nSTAND3
AAA_30
T2SSE
AAA_16
ABC_tran
Cas3-like_C_2
SLFN-g3_helicase
PhoH
TsaE
Motif
Other DBs
NCBI-GeneID:
126787582
NCBI-ProteinID:
XP_050369391
LinkDB
All DBs
Position
3:34590359..34593613
Genome browser
AA seq
1084 aa
AA seq
DB search
MTSGVKKLEYLSLISKVCSELETNLGQQYGDKAVAEFISDMGRNSKNVDEFNAKLKEFAE
FPDYVVRNLLTIIHAVLAPEKKQSSSKREEYKPGDRSRESRVKPRERSRERRGNMDQEYN
SGEPELYGVYKGRVSRVMDSGCFVELSSLRGKEGLVHVSQIEKRRISNAKDVVKRDQQVY
VKVVSTSGQKLSLSMKDVDQKTGKDLLPMKRSSYHYDTRNSNPLMLKDGSVSRASLSGIR
VKEEDRYVQPSRPRKRLSSPERWEIKQLIASGVLNAKDHPEIYQDEEVDRIMMVYKDEGP
EEELEIELNEEAPAFLQGHDMYSVDMSPVKVFKNPEGSLSRAAALQSALIKERREMRDQQ
QRAVLDSIPMDLNRPWEDPMPENGERQLAQALRGVGLSAPEVPEWKKDAYGKAISFGKRS
SLSIKEQRESLPIYQLKKQVIEAVNENRVLIVIGETGSGKTTQLTQYLAEAGYTTTGRIG
CTQPRRVAAMSVAKRVAEEVGCRLGEEVGYAIRFEDCTGPDTVIKYMTDGMLLREILLDE
NLSQYSVIMLDEAHERTIHTDVLFGLLKQLVKRRPELRLIVTSATLDAAKFSEYFFNSNI
FTIEGRTYPVKILYVKEPESDYLDAAIITVLQIHLGEPEGDILLFLTGQEEIDFACQILY
ERMKALGKNVPELIILPVYSALPSEMQSRIFDPAPPGKRKVVVATNIAEASLTIEGIIYV
IDPGFAKQNVYNPKLGLESLVVTPISQASAKQRAGRAGRTKWGYCYRLYTESAYRNEMPP
TTMPEIQRTNLGSTVLAMKAMGIHDLLSFDFMDPPSPQSLISAMEQLYSLGALDDEGFLT
RLGRKMSEFPLEPPLSKMLLASVDLGCSDEILTIIAMIQTGNVFYRPREKQDRADQKRSK
FFQPEGDHLTLLTVYQAWKSNNYSTPWCFENFVQSRSLRRAQDVRKQLMSIMDKHKLDVV
SAGNNYTKITRAITAGFFFHVARKDPQEGYKTLVENQPVYIHPSSALFQKQPGWVIYNEL
VMTTKEYMREVTAIDPKWLVELAPRFFKAAEPNKMTKRKRQQRIEPLYDKYNEPNSWRLS
RRRG
NT seq
3255 nt
NT seq
+upstream
nt +downstream
nt
atgacttctggtgtcaagaagctagagtacctttccttgatttcgaaagtctgttcggaa
ctcgaaaccaatctagggcagcagtatggggacaaagccgtagcagagttcatatcagat
atgggacgtaacagcaaaaacgtggacgagttcaatgccaaattgaaagaattcgcagaa
ttccctgattacgttgtccgtaatcttcttactatcattcacgcagttcttgctcctgag
aagaaacagagctcttctaaaagagaagagtataagcctggagatagaagtagagaaagc
agagttaagcccagagaaagaagtagagagagaagaggtaatatggatcaggagtacaat
tctggtgagccggagctgtacggtgtttataaggggagggtttcgagagtgatggattca
ggttgctttgttgagttgagttctcttagagggaaggagggtttggttcatgtttcgcag
attgagaagaggcgaatcagtaatgcaaaagatgtggtgaagagggatcagcaagtttat
gtgaaggtggtctcgacttcaggtcagaagttgagtctttcaatgaaggatgttgatcag
aagacagggaaggatttgcttcccatgaagaggagttcgtatcattatgatactcgtaac
tcgaacccgttaatgttaaaggatggttctgtgagtagggctagtctttctgggattagg
gttaaggaggaggatagatatgttcagccttctagaccaaggaagaggctaagctccccg
gagaggtgggaaatcaaacagttgattgcttcaggcgttttgaatgctaaagaccatcca
gagatttatcaagatgaggaagtggataggataatgatggtctacaaagacgagggacct
gaggaagagcttgaaattgagctcaatgaggaagccccggcctttctgcaagggcacgac
atgtattctgtggacatgtcgccggtgaaggtctttaaaaatccagaaggctcactgagc
cgtgcagctgcacttcaatctgcacttatcaaggagcgtagagaaatgcgtgatcagcaa
caaagagctgtgctggattctataccgatggacttgaatcgtccgtgggaagatccaatg
ccagagaatggtgagaggcagctcgcacaggcacttagaggtgttggtttgtcagctcct
gaggtacctgagtggaagaaagatgcttatggtaaagctattagttttggtaagaggtca
agcctttcgattaaggagcaaagggagagcctgcctatctatcagctgaagaaacaagtg
attgaagcagtgaatgagaatagagtattaattgttattggtgagacaggttctggcaag
acaacacagcttactcagtatcttgcagaagcaggttatacgactactggtaggattgga
tgtacacagcctcgtagggtggcggcaatgtcagtagcgaaaagagttgctgaagaggtt
ggttgtcgattgggggaagaagtaggttatgccattcgttttgaggattgcactggacca
gatactgtcatcaagtacatgacagacggtatgcttctgagggagattttgttagatgag
aacctttcacaatattctgtgataatgcttgatgaagctcatgagaggacaatccacacg
gatgttctttttggattactgaagcaacttgtgaagaggagaccagaacttcgtttgatt
gttacctctgctactttggatgcagcgaagttttcagaatatttcttcaatagcaacatc
ttcactatcgaggggagaacttatcctgttaaaatactctatgtcaaggagccagaaagt
gattacctagatgctgctattatcactgttttacagattcacttgggagaacctgaaggt
gacatccttctcttcttgactggacaggaagagattgattttgcctgccagattctctat
gagaggatgaaagctcttggtaaaaatgtacccgagttgattatcttaccagtttatagt
gctcttcctagtgaaatgcagtctaggatatttgatccagctccacctgggaagaggaaa
gtggttgtggctactaatattgccgaggcatctctgaccattgaaggaataatttatgtc
attgatcctggatttgcaaaacaaaatgtttacaacccaaagctggggctagaatcactg
gtcgttactcctatttcacaagcatcagccaagcaacgagctggacgtgctgggcgcaca
aaatggggatattgttaccgtctctacactgagagtgcataccgaaacgagatgcctcct
actacaatgcccgaaatccagaggacaaatcttgggtctacagtgcttgcaatgaaagca
atggggatacatgatctcttgtcttttgattttatggatcccccttcaccgcaatcactc
atttcagccatggagcaactgtacagcttaggagcattagatgacgaaggtttcctaacc
agactaggaaggaaaatgtctgagtttcctcttgaaccacccctatcaaagatgctactc
gcaagtgtggacctcggatgcagtgatgagatcttgaccatcatagcaatgatccagaca
ggcaatgtcttctacaggcctagggagaaacaagaccgggctgatcagaagagatcaaag
tttttccagccagaaggagaccatcttactttacttacagtctaccaggcttggaaaagc
aacaattattcaacaccatggtgtttcgaaaactttgttcagtctcgatccttgaggcgc
gcacaggatgtcagaaaacaactcatgagcatcatggataagcacaagctggatgttgtc
agtgccggaaacaattacacaaagataaccagagcaattacggccggctttttcttccat
gttgctagaaaggatccacaggaaggttacaagaccctagtagagaaccagccagtgtac
atccacccaagcagtgctctctttcagaagcaaccaggttgggtcatctacaatgagctc
gttatgactaccaaggagtacatgcgcgaggtgacagccattgatcccaaatggcttgtg
gaattggctcccagattcttcaaagctgcagaacctaacaagatgaccaagcgcaagcgt
caacaacgtatcgaacccttgtatgacaaatacaatgaacccaactcttggcgtcttagc
agacgccgtggttga
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